Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1047 ATGTTGTTTCACGCAATACCTCAACTTTTTCAGGCGGCGTTGCCGGCGAGTTTTACTGGCCTGGATTATACTCTAAATCAGCAACAACAGCAGGAACAGCTCATGAAGCCTCGAATCGGTGAAAGTTCTGATGATAATAACCATGGAGTGGTGGATTACATGTTGAGTAATCCTCAACATCAACAGCTAACGTCATCAGGGTTTTGCAGTTCTTCTTTCGATAAACTAAGCTTTGCTGATGTGATGCAATTTGCAGATTTTGGCCCCAAGTTGGCCTTAAATCAGACCAAGGTTTCTGAAGAAGAAACTGGGATCGATCCCGTTTACTTCCTTAAGTTTCCGGTTTTGAACGATAAGTTGCAGGATCATGATTCTCTTATGGTTCCTCAACCTGTCGTAGGAGGCGAAGAGAGGTATGACGATGCGAGAATTGTGGAAGAAATTGGGGAAGGTGAGGATGAAGAAGAAAATACCTCGGTGCAACTCCAGTTTCTGGGCGAAAATCTGCAGAAAAACACAGTAATGGATGCCAAAAACAAACGAAAGAGACCAAGGACCATCAAGACAAGCGAAGAAGTTGAAAGCCAGCGGATGACTCATATCGCAGTAGAAAGAAACAGAAGGAAGCAAATGAATGAGCATCTTCGAGTCTTGAGGTCTCTCATGCCCAGCTCATACGTACAAAGGGGAGATCAAGCATCCATTATTGGTGGAGCAATCGAGTTTGTTCGAGAGTTGGAGCAGCTTCTCCAATGCTTGGAATCTCAGAAGCGGCGAAGGCTATTCGGGGATGCCCCCAGACAGATGGGAGATTCATCATCGCTTGCAATCCAACAGCCACAACAACCGCCATTCTTTCCTCCTTTGCCTCTCCCCAATGATCAAATCAATTTTGGTACCGGACTGCGAGAGGAAACAGCTGAGAACAAGTCTTGCTTGGCCGACGTAGAAGTGAGACTGTTAGGGTTTGATGCCATGATCAAGATCCTCTCTAGACGAAGGCCAGGCCAACTCATTAAGACCATTGCAGCCCTAGAAGACTTGCAGCTCAACATCCTCCACACCAACATCACTACCATCGAACAAACTGTCCTTTATTCCTTCAACGTCAAGATTGCCAGCGAGTCCAGATTCACCGCGGAAGACATAGCGAGCTCCGTTCAACAGATCCTCAGTTTTATTCATGCAAACAGCAGCATATGA 1203 0.4597 MLFHAIPQLFQAALPASFTGLDYTLNQQQQQEQLMKPRIGESSDDNNHGVVDYMLSNPQHQQLTSSGFCSSSFDKLSFADVMQFADFGPKLALNQTKVSEEETGIDPVYFLKFPVLNDKLQDHDSLMVPQPVVGGEERYDDARIVEEIGEGEDEEENTSVQLQFLGENLQKNTVMDAKNKRKRPRTIKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPSSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLFGDAPRQMGDSSSLAIQQPQQPPFFPPLPLPNDQINFGTGLREETAENKSCLADVEVRLLGFDAMIKILSRRRPGQLIKTIAALEDLQLNILHTNITTIEQTVLYSFNVKIASESRFTAEDIASSVQQILSFIHANSSI* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1047 400 CDD ACT_UUR-ACR-like 326 390 - -
Vvi5g1047 400 Pfam Helix-loop-helix DNA-binding domain 196 247 IPR011598 GO:0046983
Vvi5g1047 400 Gene3D - 187 260 IPR036638 GO:0046983
Vvi5g1047 400 ProSiteProfiles ACT domain profile. 326 400 IPR002912 -
Vvi5g1047 400 FunFam Basic helix-loop-helix transcription factor 186 261 - -
Vvi5g1047 400 CDD bHLH_AtFAMA_like 198 269 - -
Vvi5g1047 400 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 195 260 IPR036638 GO:0046983
Vvi5g1047 400 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 195 246 IPR011598 GO:0046983
Vvi5g1047 400 PANTHER TRANSCRIPTION FACTOR FAMA 50 391 IPR044283 GO:0003700|GO:0010052
Vvi5g1047 400 SMART finulus 201 252 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1047 Vvi-Chr5 14065605 14067044 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1047 39 400 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 63.265 1.23e-154 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi5g1047 HLH 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1047 - - vvi:100258890 735.332