Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1044 ATGGTGTCAGGGTCTGGAATCTGCGCGAGGAGAGTGGTTGTTGACGCCCGCCACCACATGCTGGGGCGATTGGCTTCGATATTGGCCAAGGAGCTGCTCAATGGTCAGAAGGTGGTGGTGGTCCGATGCGAGGAGATCTGCCTATCCGGTGGCCTCGTGCGCCAGAAGATGAAGTATCTTCGCTTCCTCCGCAAGCGCATGAACACCAAGCCTTCCCATGGCCCAATCCACTTCCGCGCTCCCTCCAAGATCCTCTGGAGGACCATACGCGGGATGATTCCTCACAAGACTAAGCGTGGAGCCGCAGCGCTTGCCAGATTGAAGGCTTACGAGGGGATTCCACCTCCATATGATAAGATGAAGAGGATGGTTATTCCTGACGCTCTCAAGGTTTTGAGGCTTCAAGCTGGGCACAAGTACTGCTTGTTGGGCAGGCTTTCATCAGAGGTGGGATGGAACCACTATGAAACCATCAAGGAGCTTGAGAAGAAGAGAAAGGAAAGGGCTGAGTTGGCCTATGAGAGGAAGAAGCAGTTGAACAAACTAAGAGTCAAAGCTGAGAAGGCTGCAGTGGATAAGCTCGGATCTCAGCTAGATGTTATTGCTCCCATCAAATACTGA 621 0.5282 MVSGSGICARRVVVDARHHMLGRLASILAKELLNGQKVVVVRCEEICLSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPSKILWRTIRGMIPHKTKRGAAALARLKAYEGIPPPYDKMKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYETIKELEKKRKERAELAYERKKQLNKLRVKAEKAAVDKLGSQLDVIAPIKY* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1044 206 Hamap 50S ribosomal protein L13 [rplM]. 11 135 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vvi5g1044 206 ProSitePatterns Ribosomal protein L13 signature. 89 112 IPR023563 GO:0003735|GO:0005840|GO:0006412
Vvi5g1044 206 Coils Coil 159 181 - -
Vvi5g1044 206 FunFam 60S ribosomal protein L13a-4 8 154 - -
Vvi5g1044 206 NCBIfam 50S ribosomal protein L13 12 153 IPR005755 GO:0003735|GO:0006412|GO:0015934
Vvi5g1044 206 SUPERFAMILY Ribosomal protein L13 12 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Vvi5g1044 206 CDD Ribosomal_L13 12 113 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vvi5g1044 206 Gene3D Ribosomal protein L13 8 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Vvi5g1044 206 PANTHER RIBOSOMAL PROTEIN L13 1 189 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vvi5g1044 206 Pfam Ribosomal protein L13 12 115 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vvi5g1044 206 Gene3D - 156 206 - -
Vvi5g1044 206 FunFam 60S ribosomal protein L13a 155 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1044 Vvi-Chr5 13951429 13954051 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1044 1 206 Cytoplasmic Ribosomal Protein Gene Family AT5G48760 88.835 1.81e-139 386