Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1036 ATGGCCCCTCATCGATGGCATCTGTCTGCATTGCTTGCTCTCTTCATTGTGTCGCAACAAGCAGTGAGCATCAATGGCGTAGCTTATCATACAATCACAGTGGACCAGTCTGGGCATGGCAATTTCAGAACCATTCAGTCGGCTATCAATTCCATTCCATCAAACAATAATCGTTGGATCTGTATCTATGTCAAGGCTGGAATTTATAGGGAGAAGGTGGTAATCCCAATGGACAAGCCATTCATCTTTCTTAGAGGAGCTGGGAGGAAAAGAACTTTTATTGTTTGGGGAGATCATCTCTCAATTTCTCAGAGTCCTACCTTCTCTATGATGGCCGATAATTTCGTAGCCAGAGGCATAAGCTTTATGAACAATTACAATCTTCCGGTGCTGAAAAATCGGAATCCAAGGAAGCCAGCGGTGGCTGCTATGATAGCTGGGGACAAGGCCTCCTTTTATAAATGCAGTTTCTATGGTGTTCAAGACACTTTGTGGGATGTTGAAGGTCGACATTACTTTAAGGGATGCTTCATCGAAGGAGCTGTAGACTTCATATTTGGAGCTGGGCAGTCGATTTATGAGAAATGTATGATATCAGTAGTGGGAAGAGCTCTGGGGCCTGGCATTCGAGGGTTCATAACGGCGCAAGGAAGAGATAGTCCTAAGGAGACAAATGGGTTTGTTTTTAAAGAATGCAAAGTGACTGGTGATGGTCAGGCTTACTTGGGAAGACCATGGAGGGTGTATTCCAGGGTTCTATTCTACAAGACGGAGATGCCCGGTATTATTGTTCCTGCTGGATGGGATCCTTGGAATTATTCGGGAAAGGAGCAGCTTCTAACCTATGCTGAACATGACTGCTATGGTGCGGGAGCGGATACTTCAAAGCGTGTGTCGTGGGAGAAGAGGCTGAGCACATCAACCGTGATGGGTATGACAAGCTTGGGATACATTAATGCCGAGGGTTGGCTTAACGGACAACCTTAA 987 0.4569 MAPHRWHLSALLALFIVSQQAVSINGVAYHTITVDQSGHGNFRTIQSAINSIPSNNNRWICIYVKAGIYREKVVIPMDKPFIFLRGAGRKRTFIVWGDHLSISQSPTFSMMADNFVARGISFMNNYNLPVLKNRNPRKPAVAAMIAGDKASFYKCSFYGVQDTLWDVEGRHYFKGCFIEGAVDFIFGAGQSIYEKCMISVVGRALGPGIRGFITAQGRDSPKETNGFVFKECKVTGDGQAYLGRPWRVYSRVLFYKTEMPGIIVPAGWDPWNYSGKEQLLTYAEHDCYGAGADTSKRVSWEKRLSTSTVMGMTSLGYINAEGWLNGQP* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1036 328 ProSitePatterns Pectinesterase signature 2. 178 187 IPR033131 -
Vvi5g1036 328 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 28 325 - -
Vvi5g1036 328 SUPERFAMILY Pectin lyase-like 30 325 IPR011050 -
Vvi5g1036 328 Gene3D - 27 327 IPR012334 -
Vvi5g1036 328 ProSitePatterns Pectinesterase signature 1. 56 75 IPR018040 -
Vvi5g1036 328 Pfam Pectinesterase 32 313 IPR000070 GO:0030599|GO:0042545
Vvi5g1036 328 FunFam Pectinesterase 27 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1036 Vvi-Chr5 13691938 13693411 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1036 31 277 Carbohydrate Esterase AT2G19150 48.387 2.87e-78 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1036 - - vvi:100256537 684.871