Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1010 ATGGAAATAATCCGATCTCAGAGGAGGTCTTCCAAGGTCGACGATGTCGTCTCAACACTCCCTCTCTACCGTTCAGCTCCTCCCCTGCAAGTCAGGCTAGAAGATTTTGAACTTTTTGCCATAGATCGGCTTCGAGTTCTTAAAGGGATTTCTGATGGATTATCCCGAGGAAAGAAGCCTGACGAAATGGAAAAATTGGTAAGCGATCTATGGAAGGCAAATATGAGGCATCCACAGGCATCTGAGTTTGTCAACAAGGATATAATTTCCCACTTTGTTCTTAGGCTCGTTTATTGTAGAACGGAAGAGTTAAGGAAATGGTTTCTTTCCATGGAGACTGCCCTCTTTCGCCACCGATTCCGTCTTGAAACTCCAGAAGCTCAGAGGGTGTTATTGGCAGAATTTGACCATCCTTATAAAGCAGTTAGCCATGCCGAATTTGAGAGTGTAAAGGAAAAATTGGGCCAAGTTGCACGTTCCTTTGGGCAGTCTTTACCCAGTGCTGATGCTATATACTTCAAGGTACCGTTTGAAGAAGTCCCTGAACTTGTAGCTGGCCGTAGAGTGTTTCTTCAGAAAGGGCATGCATATGTTGCTATGAATCAGGTGGTTTCTCTCGTTGTCACACAATTTCGCAGCCATCTATCTAAGGCACTTGTGCTGACAAACAGAAAATGGACTTCTACCATCAGAGAACAAGAGAAGGAGCGGCTGACTCCTATTGTAGAAGCCTTATCTACAAGCTATTTGGGTCCAGACTATTCTCAGCCAAGAGAATTTGTAGAGATATCAATAAAAGACATAGATCAAGTAGCTAACAGTTCATTTCCTTTGTGCATGCGTCACCTATTTGAAAAGCTAAGGGAGGATCATCATTTAAAGCATGGAGGGAGGATGCAATTAGGTCTTTTTCTCAAGGGGGTTGGATTGAAATTGGATGATGCCCTTGCTTTCTGGAAAGCTGAGTTCTCCCAGAAGGTTGGTTCTGAAAGGTTTGACAAAGAATATGCTTACAGCATACGCCATAACTACGGAAAAGAAGGAAAGAGAACAGATTACACACCTTATTCTTGTCAAAAAATTATTTCATCAACTCCTGGTGTAGGCGATCATCACGGTTGCCCTTATCGACATTTTAGTGAGGAGAATTTAAGAGCTGCTCTTGGCAAGATGGGTGTGGGCAATCGTGCAATGGAGGATGTAATGGACAAAGTCCGAAATCGACATTATCAGTTGGCATGCACCTTAACGTTTGAAGCTGTTCATGGCTCCTCCTGTGATGCTGGAATTAATCATCCAAACCAATACTTCAGTGATAGCCAAAAGATCCTGCATCCAAAAGTAGATCCTGCTAGATGA 1359 0.4312 MEIIRSQRRSSKVDDVVSTLPLYRSAPPLQVRLEDFELFAIDRLRVLKGISDGLSRGKKPDEMEKLVSDLWKANMRHPQASEFVNKDIISHFVLRLVYCRTEELRKWFLSMETALFRHRFRLETPEAQRVLLAEFDHPYKAVSHAEFESVKEKLGQVARSFGQSLPSADAIYFKVPFEEVPELVAGRRVFLQKGHAYVAMNQVVSLVVTQFRSHLSKALVLTNRKWTSTIREQEKERLTPIVEALSTSYLGPDYSQPREFVEISIKDIDQVANSSFPLCMRHLFEKLREDHHLKHGGRMQLGLFLKGVGLKLDDALAFWKAEFSQKVGSERFDKEYAYSIRHNYGKEGKRTDYTPYSCQKIISSTPGVGDHHGCPYRHFSEENLRAALGKMGVGNRAMEDVMDKVRNRHYQLACTLTFEAVHGSSCDAGINHPNQYFSDSQKILHPKVDPAR* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1010 452 PIRSF DNA_primase_large 2 451 IPR016558 -
Vvi5g1010 452 FunFam DNA primase large subunit 4 245 - -
Vvi5g1010 452 Gene3D - 2 245 - -
Vvi5g1010 452 PANTHER DNA PRIMASE LARGE SUBUNIT 16 446 IPR007238 GO:0006269
Vvi5g1010 452 CDD PriL_PriS_Eukaryotic 22 440 IPR016558 -
Vvi5g1010 452 Pfam Eukaryotic and archaeal DNA primase, large subunit 172 437 IPR007238 GO:0006269
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1010 1 451 Core DNA Replication Machinery Family AT1G67320 70.552 0.0 713
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1010 K02685 - vvi:100244238 905.975