Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0998 ATGTTCCTGAAGCCTTTCACCATGGAAATGTGGGTAGTCACAGGTGCCCTCTTGATCTACACCATGTTCATAGTATGGGTACTGGAGTACCAATCCAATAATCCGGCATTCAGAGGCCCATGGAAGAATCAGCTTGGGACTGCTCTTTGGTTCACCTTCTCTTCTCTTTTCTTTGCTCATAGGGAGGCAATTCATAGCAATATTACTCGAGTAGTGATAGTGGTGTGGCTATTTGTTGTCTTCGTCTTAACCTCCAGCTACACTGCTAGTCTCTCTTCAATCCTCACTGTCCGACGACTTGAATCCAATGTGACAGATGTGGAATGGCTAAAAGCTACCAAGTCTGTGGTTGGTTGTGATGGTGATTCATTTGTGAGGAAATACTTGGAGAATGTGATTAAATTCAAAGGGGCTGATATCAAGAATATTAGCAACCAATACCAATATCCTGGCGAATTCCAGAGTGGGAACATCTCAGCTGCCTTTCTTGAACTCCCTTACGCAAAAGTTTTCATCAATCAGTTCTGCAAGAATTACACTGCCAACCAACCCCTCAACAGATTCGGAGGATTAGGATTTGTGAGTAGTAACTCGAGCTCTTCCCCATTTGCATTCACTAAATTTTTCTTGGGAAATTTGCTTGAGGGAGGAAAGTTTAGGCCACCAAATGTATGGAGTGGCCCAAACTGA 690 0.4348 MFLKPFTMEMWVVTGALLIYTMFIVWVLEYQSNNPAFRGPWKNQLGTALWFTFSSLFFAHREAIHSNITRVVIVVWLFVVFVLTSSYTASLSSILTVRRLESNVTDVEWLKATKSVVGCDGDSFVRKYLENVIKFKGADIKNISNQYQYPGEFQSGNISAAFLELPYAKVFINQFCKNYTANQPLNRFGGLGFVSSNSSSSPFAFTKFFLGNLLEGGKFRPPNVWSGPN* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0998 229 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 197 IPR015683 -
Vvi5g0998 229 Gene3D - 1 142 - -
Vvi5g0998 229 FunFam Glutamate receptor 160 191 - -
Vvi5g0998 229 FunFam Glutamate receptor 1 138 - -
Vvi5g0998 229 SUPERFAMILY Periplasmic binding protein-like II 81 218 - -
Vvi5g0998 229 Pfam Ligand-gated ion channel 8 122 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0998 Vvi-Chr5 11810099 11810878 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0998 2 194 Ion Channels AT1G05200 41.919 1.57e-43 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0998 - - vvi:100266584 372.474