Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0988 ATGACAGGTGAGACTTCTGGTTTTTCAGGCCAACACTTCTGTAATAACCCAGATAATGCTGTGTCAAGTGGTCAGTTGGCCGCAGACAGAAATGCACATGATATCTGTGCACAGACAGGTGAGGAATTTTCTGCTGAGTTCCTTCGTGATCGTGTTGCTCCAAGAAGGGCGTCTGCCATGATTGATACAGATCAGAGACAGCCAAAGGGATGGTGTAAAGGTTTTAATGAGAATCATCAGATGGTTTATGAGCCCCTCAATGGCATTCTTGGGCTAAGGAGAGGGGATTCTGAATGCAGCTCTGACATCTTGGATTTTGTTCCTGGAAAAGGATATGCAGCAGAAGTGGAGAATAGGGTTTATCTTGATAAAGCAAGCAGAATCCACAGGGAATATAGTGCCCCCAGACTAGGATCAGGTCAGCTTTTTGAGGATTTCAATTGCGATCAAGCTGTCCCAGGACATGCTACTCCATCCTTTAATATACCAGAGTCCCCTCAACCACATCATTGTCAAGGGTCAGGAGTTTCAGATGCTTCTTTCTCTGACAAGATGAAATTCCTTTGCAGCTTTGGGGGGAGGATATTACCAAGGCCAAATGATGGGAAGCTTAGATATGTGGGTGGAGAGACAAAGATTATATCCATCAGGAAAAACCTCTCTTGGGTTGAACTTGTGAAGAAAACTTCTGCTATTTGCAACCAACTTCATACAATCAAGTATCAGCTCCCAGGTGAGGATCTTGATGCACTCATATCTGTTTCTTCAGATGAAGATCTTCATCATATGATCGAGGAGTATCATGAGCTGGAAAGAATTGAGGGTTCTCAAAGACTAAGGATATTTCTTGTACCGGTGGGTGAACCTGAGAGCCCTAGTTCTTTCGAAACAAGGGCCACACAACAGAATGAAGCTGATTATCAGTATGTTGTTGCTGTGAATGGCATGCTTGACCCAAGTCCACGGAAGAACTCTAGTGGGCAGAGTGTATCAAGCCAGACGGGAAATACCTGTGATTATAGAGACCCTCCTTTTTTTCATCCTTTGGAGATGAAGGATGGAGCTAGTTCCTCAAATTTGGTGGGGATGTTCACAAATCCTGCTGCTCAGTTTTTGACTTCACTCCAGATACCAACCAAGTCATTTCAGCAATCTCCTCCTGTATCTCCATTGCCAGTTCAGAATAGAGATCCTCAGAATTCTGCAATGCATTTCTTCGAGGATCATGCATACCATGATGGTCATGAAAGCGCCAGTCAATTTGTCACAGATCAATGGCCATGTGACAACGCCTATTGTGTTGATTCTCCCAGCTATTATCATAATAATCCGTATGGGCCTGTGCCATTGATGAATTACCATCATCATAACAAACATTTTCTAGAAACTGACCAAATAAACAAACTTCCTAGTTTGCATGTCCAGAACCGTCCCAGTAGAGATTTTGTTTTTTCTCCTGTACTTGGTCAAAGTGAAGTGGATTTTGAGAGGCCTGTGCTTAAGGAGAGAGCATTCCACTCTCATCCCAAAGATCCACTGGGTCTTCTGTCAGGATCAACTAATGATTTGGTAGGTTCTCATCACCGGATGTTGCATGTGCTTTCTGATTCACAGTTGCGGGGACATGAAGGGAGGCCTGATTACCATTTGGAGGAAGGAATTATTCCATTGTCCCCATGGACTTTTGAAGTTCAAAAATCACCTTCGTTGGCTTTGTCTAATTCTCCGCAAGAATGGTCTTTTCAACCGCAAGAAATAAGCAATGAGAAATACCAAGAAGCTTATCAGAATCAGCCCACTCTCATAGTGGATGACCACAAGGGAAATAATGGACTGGGTCAAGATACATGGAACTGGGAGGATGAGATAGATACTCAGGTAGGTCAGGAAAGGAAACATGATAAAGTAATCACTGACCTTACATCACAAGATAATTCCACACTACCTAATACAAAGTTGCAAAATGTTTGTTACAACCCAAATTCAGTACCCAGTATTCATATTTCCCCACTTGAGTTTCAAGACCATGGAGACACAACTATGAATTCTGCTTCAACACTCATGATTCCAGAAAATTCTGCTGATATTGTGAGAGAGCAGCCTCATGATTACTCATTGGGTGCAAGTACACCCAAGTTTCTCGTCAAAAGCCAAAATGCTACCAAGGACATGCAGCATGCTATGACTGAGGTAATAAGTAGTGAATCAGTTCCCAATGAATCTTCTCGACCTCTATCTGTTGCAATTCAAGGAACAGGTGACCAAGAAGCAGCAGTCCCAAGCTCTGCAAGTTTAACTCCATCTGCAGGAAATAAATCTGATCCAAGCTTAAACTTGCAGAAGAATTACCCACTCAGTACAGAGTCTTCATTTGAAAATCCTGACAAGAAAGCTGTTATGAGTGGAGTATCTACTCTTAAAGATGAAGACCCTCTGAATTTCCCTTGTCATGAGGTTGATGGCCCAGAGGGACACTTTTATGAGAGATTAAATCCTGGAGATGCTATCTTTGTCCAATCACAGCCCTCAGATAATCATCATAACGGCAACACACCAGGTGCTGCAGTTATTGTTGAAGATGTAACTGATATTTTGCCTCCTGGCATTCCCTCATCTTCCCCACTTATCCCACAAGTAGAAGATGAAGCGAGTGATGTAATTACATCATCTGGAGAAGCAGAGGCAGAGAGTGATATTCAAGAATCTGAAGGGGAGGAGGGCAGAGATCTGGGTGAATCTATTAGCGATGCTGCTATGGCTGAAATGGAGGCAAGCATCTATGGTTTGCAGATAATAAAGAATGCTGATCTTGAAGAGCTGAAAGAGTTGGGATCTGGTACATTTGGAACTGTTTATCATGGAAAGTGGAGGGGAACAGATGTTGCAATTAAGAGAATTAAAAAGAGCTGCTTTGCAGGGAGATCATCTGAGCAAGAGCGGTTGACTAAAGACTTCTGGAGAGAGGCTCGGATCCTATCAAATCTTCACCATCCAAATGTGGTAGCATTTTATGGGGTGGTTCCTGATGGGCCTGGAGGAACATTGGCAACTGTAACTGAATATATGGTAAATGGATCATTGAGGCATGTCCTACTAAGGAAGGATAGATCTCTTGATCGCCGGAAAAGGCTTATAATTGCAATGGATGCAGCTTTTGGCATGGAATACTTGCATTTGAAAAACATTGTTCACTTTGATTTGAAATGCGACAATTTGCTCGTCAATATGAGGGACACTCAACGGCCAATATGCAAGGTTGGAGATTTTGGATTATCGAGAATTAAACGCAATACACTTGTATCGGGTGGTGTTCGAGGAACCCTTCCATGGATGGCACCAGAATTATTGAATGGTAGCAGTAACCGGGTTTCGGAGAAGGTTGACGTTTTCTCATTTGGCGTTGCAATGTGGGAGATCCTAACTGGAGAAGAGCCCTATGCAAACATGCACTGTGGTGCTATCATAGGGGGAATTGTGAGTAACACACTTAGGCCTCCTATTCCGGAGCGATGTGATCCTGACTGGAGAAAGTTAATGGAAGAGTGCTGGTCACCTGATCCGGCAGCTAGGCCATCATTCACTGAGATAACAAACAGGCTGCGGGTTATGTCCATGGCGATCCAGACAAAGCGGCATAACCAGGCAAACAGATGA 3654 0.4335 MTGETSGFSGQHFCNNPDNAVSSGQLAADRNAHDICAQTGEEFSAEFLRDRVAPRRASAMIDTDQRQPKGWCKGFNENHQMVYEPLNGILGLRRGDSECSSDILDFVPGKGYAAEVENRVYLDKASRIHREYSAPRLGSGQLFEDFNCDQAVPGHATPSFNIPESPQPHHCQGSGVSDASFSDKMKFLCSFGGRILPRPNDGKLRYVGGETKIISIRKNLSWVELVKKTSAICNQLHTIKYQLPGEDLDALISVSSDEDLHHMIEEYHELERIEGSQRLRIFLVPVGEPESPSSFETRATQQNEADYQYVVAVNGMLDPSPRKNSSGQSVSSQTGNTCDYRDPPFFHPLEMKDGASSSNLVGMFTNPAAQFLTSLQIPTKSFQQSPPVSPLPVQNRDPQNSAMHFFEDHAYHDGHESASQFVTDQWPCDNAYCVDSPSYYHNNPYGPVPLMNYHHHNKHFLETDQINKLPSLHVQNRPSRDFVFSPVLGQSEVDFERPVLKERAFHSHPKDPLGLLSGSTNDLVGSHHRMLHVLSDSQLRGHEGRPDYHLEEGIIPLSPWTFEVQKSPSLALSNSPQEWSFQPQEISNEKYQEAYQNQPTLIVDDHKGNNGLGQDTWNWEDEIDTQVGQERKHDKVITDLTSQDNSTLPNTKLQNVCYNPNSVPSIHISPLEFQDHGDTTMNSASTLMIPENSADIVREQPHDYSLGASTPKFLVKSQNATKDMQHAMTEVISSESVPNESSRPLSVAIQGTGDQEAAVPSSASLTPSAGNKSDPSLNLQKNYPLSTESSFENPDKKAVMSGVSTLKDEDPLNFPCHEVDGPEGHFYERLNPGDAIFVQSQPSDNHHNGNTPGAAVIVEDVTDILPPGIPSSSPLIPQVEDEASDVITSSGEAEAESDIQESEGEEGRDLGESISDAAMAEMEASIYGLQIIKNADLEELKELGSGTFGTVYHGKWRGTDVAIKRIKKSCFAGRSSEQERLTKDFWREARILSNLHHPNVVAFYGVVPDGPGGTLATVTEYMVNGSLRHVLLRKDRSLDRRKRLIIAMDAAFGMEYLHLKNIVHFDLKCDNLLVNMRDTQRPICKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLNGSSNRVSEKVDVFSFGVAMWEILTGEEPYANMHCGAIIGGIVSNTLRPPIPERCDPDWRKLMEECWSPDPAARPSFTEITNRLRVMSMAIQTKRHNQANR* 1218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0988 1217 MobiDBLite consensus disorder prediction 733 796 - -
Vvi5g0988 1217 Pfam Protein tyrosine and serine/threonine kinase 938 1200 IPR001245 GO:0004672|GO:0006468
Vvi5g0988 1217 Gene3D Phosphorylase Kinase; domain 1 930 1024 - -
Vvi5g0988 1217 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 204 286 - -
Vvi5g0988 1217 MobiDBLite consensus disorder prediction 881 909 - -
Vvi5g0988 1217 CDD PB1_UP2 188 283 - -
Vvi5g0988 1217 SMART PB1_new 199 286 IPR000270 GO:0005515
Vvi5g0988 1217 CDD STKc_MAP3K-like 943 1200 - -
Vvi5g0988 1217 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1062 1074 IPR008271 GO:0004672|GO:0006468
Vvi5g0988 1217 MobiDBLite consensus disorder prediction 733 794 - -
Vvi5g0988 1217 ProSitePatterns Protein kinases ATP-binding region signature. 943 968 IPR017441 GO:0005524
Vvi5g0988 1217 PANTHER SERINE-THREONINE PROTEIN KINASE 251 1201 - -
Vvi5g0988 1217 MobiDBLite consensus disorder prediction 318 343 - -
Vvi5g0988 1217 PRINTS Tyrosine kinase catalytic domain signature 1056 1074 IPR001245 GO:0004672|GO:0006468
Vvi5g0988 1217 PRINTS Tyrosine kinase catalytic domain signature 1019 1032 IPR001245 GO:0004672|GO:0006468
Vvi5g0988 1217 PRINTS Tyrosine kinase catalytic domain signature 1171 1193 IPR001245 GO:0004672|GO:0006468
Vvi5g0988 1217 PRINTS Tyrosine kinase catalytic domain signature 1127 1149 IPR001245 GO:0004672|GO:0006468
Vvi5g0988 1217 SUPERFAMILY CAD & PB1 domains 200 286 - -
Vvi5g0988 1217 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 930 1024 - -
Vvi5g0988 1217 Pfam PB1 domain 200 285 IPR000270 GO:0005515
Vvi5g0988 1217 ProSiteProfiles Protein kinase domain profile. 937 1202 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0988 1217 Gene3D - 203 285 - -
Vvi5g0988 1217 SUPERFAMILY Protein kinase-like (PK-like) 926 1200 IPR011009 -
Vvi5g0988 1217 SMART serkin_6 937 1206 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0988 1217 Gene3D Transferase(Phosphotransferase) domain 1 1025 1217 - -
Vvi5g0988 1217 MobiDBLite consensus disorder prediction 319 339 - -
Vvi5g0988 1217 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1025 1216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0988 Vvi-Chr5 11545076 11551320 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0988 38 405 MAP Kinase Kinase Kinase AT1G16270 36.968 1.16e-44 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vvi5g0988 PK_Tyr_Ser-Thr 4.8e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0988 - - vvi:100264925 2476.05