Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0983 ATGAAGCTCTTCTCGGACTCCCTAAACCTTTTTTCTACTTGTCACCCATATCTTCTTCTTCAGTTAGATCCGTCTAGAGAGAGAGCTTTCGACCCAATGCCAATGGCGGGTTCCAAGGGGTGGACTTCCCTCTGCTCACTCCTGCTTTTTTTCCTCTTCGTCGCTGTGATGGCCAATGACCGAAATGGAGGAACAGAGCAGTTGCAGAGCTCAAACAACTCATCAATGGCTGCCAGGAATGAGCATGCAGTTGATGACCCAGATGCAGTGGCTTCAATGGTGGACATGAGCATTCGGAACAGCACAGAGAGAAGGAAATTAGGTTATTTCTCGTGTGGAACTGGTAATCCCATTGATGACTGCTGGCGATGTGACCACAATTGGCAAAAGAACCGTAAGCGCCTTGCAGACTGCGGCATTGGCTTTGGGCGAAATGCAATTGGGGGCCGTGATGGACGCTTCTATGTGGTCACTGACCCTGGTGATGATGATCCTGTCAACCCCAAGCCTGGCACTCTGCGCCATGCTGTCATCCAGGATGCTCCTCTCTGGATTGTGTTCAAGCGAGACATGGTGATCACACTGAAGCAGGAGCTCATCATGAACAGCTTCAAAACAATAGATGGGCGTGGGGTCAATGTCCACATTGCTAATGGAGCATGCATCACCGTCCAATTTGTCACGAATGTTATAATTCATGGTCTTCACATCCATGACTGCAAGCCCACTGGGAATGCCATGGTGAGGAGCTCACCAAGTCACTTTGGGTGGAGGACAATGGCCGATGGCGATGCCATTTCGATTTTTGGTTCAAGCCATATATGGGTCGATCACAATTCACTCTCTAGCTGTGCTGATGGCCTCGTTGATGCTGTCATGGGCTCGACTGCCATTACCATTTCCAACAACCACTTTGCCCACCACAATGAGGTGATGCTGTTGGGCCACAGTGATTCTTATGAAAGAGACAAGCAAATGCAAGTGACAATTGCCTATAACCATTTTGGAGAGGGTCTGATCCAGAGGATGCCAAGGTGCAGACATGGATATTTCCATGTGGTCAACAATGACTACACTCACTGGGAAATGTATGCTATTGGTGGAAGTGCAAGCCCCACCATCAACAGCCAGGGCAACAGATATCTTGCACCAGTCAATCCTTTTGCAAAAGAGGTGACAAAAAGGGTAGACACGCCTTCAGGCCAGTGGAAGGGTTGGAATTGGAGGTCAGAAGGAGACCTGCTGTTGAATGGAGCCTACTTCACCCCATCTGGTGCCGGTGCCTCAGCCAGCTATGCTAGAGCTTCAAGCTTGGGAGCCAAGTCCTCTTCCATGGTTGGCTCCATTACTTCCAATGCTGGTGCTCTCTCCTGCCGCAGGGGTTCCCAGTGCTAG 1395 0.5004 MKLFSDSLNLFSTCHPYLLLQLDPSRERAFDPMPMAGSKGWTSLCSLLLFFLFVAVMANDRNGGTEQLQSSNNSSMAARNEHAVDDPDAVASMVDMSIRNSTERRKLGYFSCGTGNPIDDCWRCDHNWQKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPGDDDPVNPKPGTLRHAVIQDAPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACITVQFVTNVIIHGLHIHDCKPTGNAMVRSSPSHFGWRTMADGDAISIFGSSHIWVDHNSLSSCADGLVDAVMGSTAITISNNHFAHHNEVMLLGHSDSYERDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRYLAPVNPFAKEVTKRVDTPSGQWKGWNWRSEGDLLLNGAYFTPSGAGASASYARASSLGAKSSSMVGSITSNAGALSCRRGSQC* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0983 464 FunFam Pectate lyase 115 457 - -
Vvi5g0983 464 SMART amb_all 190 387 IPR002022 -
Vvi5g0983 464 Pfam Pectate lyase 198 379 IPR002022 -
Vvi5g0983 464 PANTHER PECTATE LYASE 18-RELATED 82 462 IPR045032 GO:0030570
Vvi5g0983 464 PRINTS Pollen allergen Amb family signature 262 283 IPR018082 -
Vvi5g0983 464 PRINTS Pollen allergen Amb family signature 342 361 IPR018082 -
Vvi5g0983 464 PRINTS Pollen allergen Amb family signature 364 383 IPR018082 -
Vvi5g0983 464 PRINTS Pollen allergen Amb family signature 138 155 IPR018082 -
Vvi5g0983 464 PRINTS Pollen allergen Amb family signature 406 430 IPR018082 -
Vvi5g0983 464 PRINTS Pollen allergen Amb family signature 162 187 IPR018082 -
Vvi5g0983 464 PRINTS Pollen allergen Amb family signature 198 214 IPR018082 -
Vvi5g0983 464 PRINTS Pollen allergen Amb family signature 435 458 IPR018082 -
Vvi5g0983 464 SUPERFAMILY Pectin lyase-like 93 459 IPR011050 -
Vvi5g0983 464 Gene3D - 115 457 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0983 Vvi-Chr5 11376895 11380870 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0983 61 464 Polysaccharide Lyase AT4G13710 81.295 0.0 713
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0983 K01728 - vvi:100232902 943.725