Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0981 ATGAAGTGTGTGTTTTTGAGTTTTGAGTTGAAAGCAAGCAAAGAGAGAACAGAGAGAAGGGAGAGAGAGGAAGCAGAACCCAATGATGCAAACCCGAGAAGAAAGGTTTGGAAATTGAGGCAAATGTCGATGCCCAGCTCGAGGCAACCCTACAACTTCTCATCATTCTTGGTCACTCCGCCACCTCTCTTCCTTTCCTTCTTCTTCCTTGGTCTTCTCACAGCCCCCGTCTTCGCCGTTGACAACCATGAGGCCTTTCTTCTCTTCTCGTGGCTGCATAGCACCCCTTCACCAGCCACCTCATCTTTACCAGACTGGAACATAAATGACGCCACCCCTTGTAACTGGACTTCCATAGTTTGCTCTCCCCGAGGTTTTGTAACCGAAATCAATATACAGTCTGTCCATCTCGAGCTCCCTATACCATCAAATCTCTCTTCCTTCCAATTTCTTCAGAAGCTCGTCATTTCAGATGCCAATATTACTGGAACCATCCCTCCTGAGATCGTTGGCTGCACGGCACTTAGAATCATCGACCTTAGTTCCAACAGTCTTGTTGGTACCATCCCAGCAAGCCTAGGTAAGCTTCAGAAGCTTGAGGACTTGGTTTTGAATTCCAATCAGCTCACTGGGAAAATCCCAGTTGAGCTTAGCAACTGCCTTAATCTTAGGAATCTCCTCCTCTTTGATAATCGTCTTGGAGGAAATATTCCACCAGATTTAGGGAAGTTGTCTAATCTGGAAGTTATACGTGCCGGAGGGAACAAAGAAATTACTGGGAAAATCCCTGCAGAGCTCGGAGAATGCAGCAACCTGACTGTGCTGGGGCTGGCTGATACCCAAGTTTCAGGATCCTTACCCGCCTCATTGGGTAAGCTTAGCAGACTTCAGACATTGTCCATATATACTACTATGCTGTCTGGTGAAATTCCTCCTGATATAGGTAACTGTTCTGAGCTTGTAAATTTATACCTTTATGAAAACAGTCTCTCTGGTTCAGTTCCGCCAGAGCTTGGTAAGCTTCAGAAGCTTCAAACCCTCTTGCTATGGCAGAATACTCTCGTTGGTGTCATCCCAGAAGAGATTGGGAATTGTAGTAGCTTGCAAATGATTGATCTCTCTTTGAATTCTTTATCTGGAACCATACCACCATCTCTTGGGGACCTTTCAGAGCTTCAAGAGTTCATGATTAGCAATAACAATGTCTCTGGTTCAATACCTTCAGTTCTCTCAAATGCAAGGAATCTTATGCAGTTACAACTCGACACAAATCAGATATCAGGTTTGATCCCACCAGAGCTTGGGAAGTTGTCAAAGCTTGGGGTTTTCTTTGCTTGGGACAACCAGCTGGAAGGAAGCATTCCTTCTACTTTGGCTAATTGTAGAAACCTCCAAGTACTGGACTTGTCTCACAATTCGCTTACTGGTACCATTCCTTCTGGCTTGTTTCAGCTTCAAAACCTCACAAAACTGCTCTTGATTTCCAATGATATTTCGGGTACCATACCTCCAGAAATTGGTAATTGCAGTTCTCTTGTGCGGATGCGGCTTGGAAACAACCGGATTACCGGTGGGATCCCAAGACAAATTGGTGGACTCAAGAACTTAAATTTTCTTGATCTGTCTAGAAATCGCCTTTCAGGGTCAGTGCCAGATGAGATTGAAAGTTGCACAGAATTGCAGATGGTAGACCTCAGCAACAATATTCTAGAAGGGCCCCTGCCTAATTCACTGTCCTCTCTATCTGGTCTCCAAGTCTTGGATGTTTCAGTGAACCGATTAACGGGCCAGATTCCAGCAAGTTTTGGTCGTCTAGTTTCATTAAACAAGCTCATTCTAAGCAGAAATTCTTTATCTGGATCAATACCTCCTTCACTGGGCCTCTGTTCAAGTCTCCAATTGCTTGATCTCAGCAGCAATGAGCTCTTTGGCAGCATACCCATGGAACTTTCTCAGATTGAGGCCCTGGAGATTGCTCTCAACCTCAGTTGCAATGGGCTCACTGGGCCAATCCCAACTCAAATATCTGCACTCAACAAGCTTTCCATACTGGATCTTTCGCACAACAAGCTTGAGGGGAATTTGATTCCGCTCGCCAAGCTTGACAATCTTGTTTCTCTAAACATCTCTTACAATAATTTCACTGGTTATCTTCCAGACAACAAGCTCTTCCGACAGTTACCAGCCATAGACCTAGCTGGAAACCAAGGGCTTTGCTCTTGGGGCAGGGACTCATGCTTCTTGAATGATGTGACTGGTTTAACAAGAAATAAAGATAACGTAAGGCAGTCGCGGAAACTCAAACTAGCCATTGCATTGCTGATAACAATGACAGTGGCACTGGTCATCATGGGAACAATTGCAGTGATTCGGGCACGAACAACCATCAGAGGAGATGATGATTCAGAGTTGGGAGGAGATTCATGGCCATGGCAATTCACTCCATTCCAGAAGTTAAATTTCTCTGTGGAGCAAATATTGAGATGCCTGGTGGATTCCAATGTGATAGGAAAAGGTTGTTCCGGGGTTGTGTATCGTGCTGACATGGACAATGGTGAAGTTATTGCAGTAAAGAAGCTTTGGCCAACAGCAATGGGAGCGGCCAATGGTGACAATGATAAATCTGGAGTTCGTGATTCCTTCTCTGCAGAGGTTAAGACTCTTGGCTCAATCCGTCATAAGAACATTGTTAGGTTCTTGGGCTGTTGTTGGAATCGAAACACAAGATTGCTCATGTATGATTACATGCCCAATGGAAGCTTGGGTAGTCTCCTACATGAGAAGGCAGGAAATTCCCTCGAATGGGGACTACGGTACCAGATTTTGTTGGGGGCGGCACAAGGCCTTGCTTATTTACACCATGATTGTGTTCCGCCCATTGTCCACAGGGACATCAAGGCCAACAACATTCTCATTGGTCTTGAATTTGAGCCTTATATTGCTGATTTTGGCCTTGCTAAGCTCGTCAATGATGCAGATTTTGCTAGATCCTCTAATACGGTTGCTGGCTCCTATGGATATATTGCTCCTGAATATGGTTACATGATGAAGATCACAGAGAAGAGCGATGTTTACAGCTACGGAATTGTTGTATTGGAAGTTTTGACAGGGAAGCAACCAATTGACCCAACAATACCAGATGGTCTCCACGTGGTGGACTGGGTGAGACAGAAGAAGGGAGGAGTTGAAGTCCTTGACCCAAGTTTACTATGTCGACCTGAATCTGAAGTGGATGAAATGATGCAAGCATTAGGCATAGCCTTACTATGTGTAAACTCATCCCCTGATGAAAGGCCTACTATGAAAGACGTGGCAGCAATGCTCAAGGAGATCAAACATGAGAGAGAGGACTATGCAAAGGTTGATGTGCTCCTCAAGGGATTTCCAGCAACAGATATTCAAGACAATAAGAGCTCCAGTGGAGCTCCTGCAACGTCATCATCAACGCCAACAACACAAAGCTTGTACCCAAAAAGCAATAACACAAGCTTTTCTGCATCCTCACTACTTTATTCATCTTCATCTAATGGCAAAATGGGGTTCAATTGA 3549 0.4474 MKCVFLSFELKASKERTERREREEAEPNDANPRRKVWKLRQMSMPSSRQPYNFSSFLVTPPPLFLSFFFLGLLTAPVFAVDNHEAFLLFSWLHSTPSPATSSLPDWNINDATPCNWTSIVCSPRGFVTEINIQSVHLELPIPSNLSSFQFLQKLVISDANITGTIPPEIVGCTALRIIDLSSNSLVGTIPASLGKLQKLEDLVLNSNQLTGKIPVELSNCLNLRNLLLFDNRLGGNIPPDLGKLSNLEVIRAGGNKEITGKIPAELGECSNLTVLGLADTQVSGSLPASLGKLSRLQTLSIYTTMLSGEIPPDIGNCSELVNLYLYENSLSGSVPPELGKLQKLQTLLLWQNTLVGVIPEEIGNCSSLQMIDLSLNSLSGTIPPSLGDLSELQEFMISNNNVSGSIPSVLSNARNLMQLQLDTNQISGLIPPELGKLSKLGVFFAWDNQLEGSIPSTLANCRNLQVLDLSHNSLTGTIPSGLFQLQNLTKLLLISNDISGTIPPEIGNCSSLVRMRLGNNRITGGIPRQIGGLKNLNFLDLSRNRLSGSVPDEIESCTELQMVDLSNNILEGPLPNSLSSLSGLQVLDVSVNRLTGQIPASFGRLVSLNKLILSRNSLSGSIPPSLGLCSSLQLLDLSSNELFGSIPMELSQIEALEIALNLSCNGLTGPIPTQISALNKLSILDLSHNKLEGNLIPLAKLDNLVSLNISYNNFTGYLPDNKLFRQLPAIDLAGNQGLCSWGRDSCFLNDVTGLTRNKDNVRQSRKLKLAIALLITMTVALVIMGTIAVIRARTTIRGDDDSELGGDSWPWQFTPFQKLNFSVEQILRCLVDSNVIGKGCSGVVYRADMDNGEVIAVKKLWPTAMGAANGDNDKSGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRNTRLLMYDYMPNGSLGSLLHEKAGNSLEWGLRYQILLGAAQGLAYLHHDCVPPIVHRDIKANNILIGLEFEPYIADFGLAKLVNDADFARSSNTVAGSYGYIAPEYGYMMKITEKSDVYSYGIVVLEVLTGKQPIDPTIPDGLHVVDWVRQKKGGVEVLDPSLLCRPESEVDEMMQALGIALLCVNSSPDERPTMKDVAAMLKEIKHEREDYAKVDVLLKGFPATDIQDNKSSSGAPATSSSTPTTQSLYPKSNNTSFSASSLLYSSSSNGKMGFN* 1183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0981 1182 SMART LRR_typ_2 581 604 IPR003591 -
Vvi5g0981 1182 SMART LRR_typ_2 341 365 IPR003591 -
Vvi5g0981 1182 SMART LRR_typ_2 461 485 IPR003591 -
Vvi5g0981 1182 SMART LRR_typ_2 389 413 IPR003591 -
Vvi5g0981 1182 SMART LRR_typ_2 196 220 IPR003591 -
Vvi5g0981 1182 SMART LRR_typ_2 533 557 IPR003591 -
Vvi5g0981 1182 SMART LRR_typ_2 605 629 IPR003591 -
Vvi5g0981 1182 SMART LRR_typ_2 701 726 IPR003591 -
Vvi5g0981 1182 ProSiteProfiles Leucine-rich repeat profile. 463 485 IPR001611 GO:0005515
Vvi5g0981 1182 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 916 1126 - -
Vvi5g0981 1182 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 329 1108 - -
Vvi5g0981 1182 Gene3D Ribonuclease Inhibitor 478 573 IPR032675 -
Vvi5g0981 1182 Gene3D Ribonuclease Inhibitor 278 379 IPR032675 -
Vvi5g0981 1182 Pfam Leucine rich repeat 511 568 IPR001611 GO:0005515
Vvi5g0981 1182 Pfam Leucine rich repeat 583 642 IPR001611 GO:0005515
Vvi5g0981 1182 Pfam Leucine rich repeat 343 401 IPR001611 GO:0005515
Vvi5g0981 1182 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 813 915 - -
Vvi5g0981 1182 FunFam Nuclear pore complex protein NUP107 81 237 - -
Vvi5g0981 1182 Gene3D Phosphorylase Kinase; domain 1 815 915 - -
Vvi5g0981 1182 PRINTS Leucine-rich repeat signature 464 477 - -
Vvi5g0981 1182 PRINTS Leucine-rich repeat signature 678 691 - -
Vvi5g0981 1182 SUPERFAMILY Protein kinase-like (PK-like) 814 1109 IPR011009 -
Vvi5g0981 1182 Gene3D Ribonuclease Inhibitor 659 746 IPR032675 -
Vvi5g0981 1182 Gene3D Ribonuclease Inhibitor 574 658 IPR032675 -
Vvi5g0981 1182 ProSiteProfiles Leucine-rich repeat profile. 680 702 IPR001611 GO:0005515
Vvi5g0981 1182 MobiDBLite consensus disorder prediction 1132 1160 - -
Vvi5g0981 1182 MobiDBLite consensus disorder prediction 14 34 - -
Vvi5g0981 1182 Gene3D Transferase(Phosphotransferase) domain 1 916 1126 - -
Vvi5g0981 1182 Gene3D Ribonuclease Inhibitor 380 477 IPR032675 -
Vvi5g0981 1182 Gene3D Ribonuclease Inhibitor 127 277 IPR032675 -
Vvi5g0981 1182 Pfam Protein tyrosine and serine/threonine kinase 834 1107 IPR001245 GO:0004672|GO:0006468
Vvi5g0981 1182 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 337 445 - -
Vvi5g0981 1182 ProSitePatterns Protein kinases ATP-binding region signature. 836 859 IPR017441 GO:0005524
Vvi5g0981 1182 SMART serkin_6 830 1112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0981 1182 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 463 750 - -
Vvi5g0981 1182 Pfam Leucine Rich Repeat 175 196 IPR001611 GO:0005515
Vvi5g0981 1182 Pfam Leucine Rich Repeat 463 481 IPR001611 GO:0005515
Vvi5g0981 1182 ProSitePatterns Serine/Threonine protein kinases active-site signature. 960 972 IPR008271 GO:0004672|GO:0006468
Vvi5g0981 1182 ProSiteProfiles Protein kinase domain profile. 830 1116 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0981 1182 SUPERFAMILY RNI-like 322 689 - -
Vvi5g0981 1182 FunFam Predicted protein 238 336 - -
Vvi5g0981 1182 SUPERFAMILY L domain-like 83 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0981 Vvi-Chr5 11311929 11315630 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0981 76 1127 Receptor kinase-like Gene Family AT5G56040 49.343 0.0 992
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi5g0981 PK_Tyr_Ser-Thr 2.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0981 - - vvi:100266591 2199.86