Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0975 ATGTCGCTGAAGCAATCTGAAAACTTCAGTGGCGCCGAGTATGATGTTCGTATAGTGAACGGGTTCACGGACAATTCATCGCTGGCTTTGGTGATTTGGTGCACATCCGACAACAAGGATATAGGTGGGCGTGCCCTTCAGGTGGGTGATGATTTCAGCTGGAGTGTGAAAACCAATTTATGGGGAGCCACTCCTTTCCACTGCACCATGAAATGGGATGCAACGAGGAAGCAGTTTGATGCCTTTCAGGTCCAGCGGGACGTTCAACGATGTGGCCCTCTTAGGACCTGCTTCTGGTTGGTCAGAGAGGATGGATTTTATTTTAGCAATGACCAAGTCAACTGGAAGAAAGATTTTTCATGGTAA 366 0.4781 MSLKQSENFSGAEYDVRIVNGFTDNSSLALVIWCTSDNKDIGGRALQVGDDFSWSVKTNLWGATPFHCTMKWDATRKQFDAFQVQRDVQRCGPLRTCFWLVREDGFYFSNDQVNWKKDFSW* 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0975 121 Pfam Plant self-incompatibility protein S1 16 121 IPR010264 -
Vvi5g0975 121 PANTHER - 13 115 IPR010264 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0975 Vvi-Chr5 11185873 11186238 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0975 28 105 Carbohydrate Esterase AT3G16970 32.911 1.05e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0975 - - vvi:100252771 265.003