Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0974 ATGGTTATTAGAATGTCAAAGAATTGCAGATCAAGGAGACTTTTCGGGGTGGGGTTTACTGGATTTTTAATTGTTGCGGCTCTTCTGGTTTGTGGTTCAGAAGGGTTGAATTCCGAGGGGCTACTCCTCCTTGAGCTGAAGCATGGGCTCTACGATCAATTTAATCATTTGTATAACTGGAATCCTAGTGATCAGACACCATGTGGGTGGATAGGTGTGAATTGCACGGGTTATGATCCAGTGGTCATCTCTCTTGATTTGAACTCGATGAATCTGTCTGGAACTCTAAGTCCTAGCATTGGTGGTTTGAGCTACCTAACTTATCTTGATGTTTCTCACAATGGGCTTACTGGAAATATACCCAAGGAGATTGGAAATTGTTCGAAGTTGGAGACACTTTGTTTGAACGATAATCAGTTTGACGGGTCAATTCCTGCTGAATTTTGTAGTTTGTCTTGTTTGACAGATTTGAATGTATGCAATAACAAATTGTCTGGTCCTTTCCCTGAAGAGATTGGGAATCTTTACGCGCTTGTTGAATTAGTGGCATACACTAACAATCTCACAGGTCCCTTGCCACGTTCTTTTGGGAATCTCAAGAGTTTGAAAACATTTCGAGCTGGGCAGAATGCTATTTCTGGAAGTCTTCCTGCAGAGATAGGTGGATGTAGGAGCTTGAGATATCTTGGACTTGCCCAAAATGATTTAGCTGGAGAAATACCCAAGGAGATTGGGATGCTTAGGAACTTGACGGATCTGATTCTTTGGGGTAATCAGTTGTCAGGTTTTGTCCCAAAGGAACTTGGGAATTGTACGCATCTTGAAACTCTTGCTTTGTACCAGAATAATCTCGTGGGAGAGATACCCAGGGAGATTGGGAGCCTCAAGTTTTTGAAGAAGTTATACATCTATAGAAATGAGTTGAATGGTACCATTCCAAGAGAGATAGGTAATCTTTCTCAAGCCACAGAAATTGATTTCTCGGAGAACTACCTGACTGGAGGGATTCCAACTGAGTTCAGTAAGATAAAGGGTCTAAAATTACTGTATCTTTTCCAGAATGAGCTGAGTGGTGTCATTCCAAATGAGCTTAGTAGCTTGAGGAACTTGGCGAAGCTTGATCTCTCGATTAATAACCTAACAGGTCCTATTCCTGTTGGATTTCAGTATTTGACACAAATGTTCCAGTTACAGTTGTTCGACAACCGTCTGACTGGTCGTATTCCTCAAGCTCTTGGACTTTATAGCCCACTTTGGGTGGTTGATTTTTCTCAAAACCACTTGACAGGAAGCATACCTTCTCATATATGTCGACGATCTAATTTGATTTTGTTGAATCTCGAGTCTAATAAGCTGTATGGAAATATCCCAATGGGGGTCTTAAAATGTAAATCCTTGGTGCAACTTCGTCTGGTTGGAAACAGTCTTACTGGAAGCTTCCCTTTAGAGTTGTGCAGATTGGTGAACCTTTCAGCTATTGAATTGGACCAGAACAAGTTCAGTGGTCTAATTCCTCCAGAGATTGCAAACTGCAGAAGGTTACAAAGGCTTCATCTTGCAAACAATTACTTCACATCTGAGTTACCAAAGGAGATAGGGAACCTCTCCGAGTTGGTGACTTTTAATATCTCATCTAATTTTCTCACTGGACAGATTCCCCCTACGATTGTTAACTGCAAGATGCTTCAACGACTTGATCTCAGCAGGAACAGCTTTGTTGATGCTTTACCAAAAGAACTTGGGACTCTTTTGCAGTTGGAGCTTCTCAAGCTCTCCGAAAATAAATTTTCTGGAAATATACCTGCAGCATTGGGAAATCTCTCCCATTTGACAGAGTTGCAGATGGGTGGAAATTTGTTTTCAGGTGAAATACCACCAGAGTTGGGTGCTCTTTCAAGCTTGCAGATTGCAATGAATCTTAGTTATAATAATCTCTTGGGGAGAATACCACCTGAGCTTGGGAATCTTATTTTACTGGAGTTTCTACTGCTTAACAACAATCATTTGAGTGGTGAAATTCCAAGCACATTTGGAAATCTCTCAAGTTTAATGGGGTGCAACTTCTCATACAATGACCTCACTGGACCTTTACCTTCCATTCCACTGTTTCAGAACATGGTTAGCAGCAGTTTTATTGGAAATGAAGGCCTCTGTGGTGGGCGTCTTAGCAATTGCAATGGAACTCCATCTTTTAGTTCTGTTCCACCTTCTTTGGAGAGTGTGGATGCTCCTCGGGGTAAAATCATCACAGTAGTTGCAGCTGTTGTAGGTGGGATCTCTCTCATTCTGATTGTAATTATTTTATATTTTATGAGACGTCCAGTTGAAGTAGTTGCTTCTTTGCAAGACAAAGAGATTCCCTCATCTGTTTCTGATATCTACTTTCCTCCAAAGGAGGGTTTCACTTTCCAAGATCTAGTTGAGGCCACAAACAATTTTCATGACAGCTACGTGGTTGGAAGGGGGGCTTGTGGAACTGTTTATAAGGCAGTTATGCATTCTGGGCAAACCATTGCAGTTAAGAAGCTTGCCTCTAACAGGGAAGGAAACAGCATTGACAACAGTTTCCGAGCTGAAATTCTCACACTGGGAAAGATTAGGCATCGTAATATCGTGAAGCTCTATGGTTTTTGCTATCACCAGGGTTCCAATCTGCTTCTGTATGAGTACATGGCAAGGGGTAGTTTGGGTGAGTTGCTTCATGGGGCATCTTGTAGCTTGGAATGGCAAACCCGGTTCACTATTGCTCTTGGGGCTGCTGAAGGTCTTGCTTATTTACATCATGACTGCAAACCAAGGATCATTCACCGTGATATAAAATCTAATAATATTCTACTTGACAGTAATTTTGAAGCTCATGTTGGTGATTTTGGTTTGGCAAAGGTTGTGGACATGCCTCAATCTAAATCAATGTCAGCTGTTGCTGGATCATACGGATACATTGCCCCTGAATATGCTTACACTATGAAGGTTACAGAGAAATGCGACATATATAGCTATGGGGTTGTTCTATTGGAGCTGTTAACAGGGAGAACTCCTGTACAGCCACTAGATCAAGGGGGCGATCTTGTCTCATGGGTGAGGAATTATATTCGGGACCATTCATTGACATCTGAGATATTTGACACTCGTTTAAATCTAGAAGACGAAAATACTGTTGATCACATGATTGCTGTCTTAAAAATTGCTATACTGTGCACAAATATGTCCCCTCCTGACCGGCCTTCAATGCGGGAAGTTGTGCTGATGCTGATTGAGTCTAATGAGCATGAGGGGTACTATATCTCATCTCCAATCAATGATCTTCCTCTGAAAGATGATTCATCATGA 3330 0.4156 MVIRMSKNCRSRRLFGVGFTGFLIVAALLVCGSEGLNSEGLLLLELKHGLYDQFNHLYNWNPSDQTPCGWIGVNCTGYDPVVISLDLNSMNLSGTLSPSIGGLSYLTYLDVSHNGLTGNIPKEIGNCSKLETLCLNDNQFDGSIPAEFCSLSCLTDLNVCNNKLSGPFPEEIGNLYALVELVAYTNNLTGPLPRSFGNLKSLKTFRAGQNAISGSLPAEIGGCRSLRYLGLAQNDLAGEIPKEIGMLRNLTDLILWGNQLSGFVPKELGNCTHLETLALYQNNLVGEIPREIGSLKFLKKLYIYRNELNGTIPREIGNLSQATEIDFSENYLTGGIPTEFSKIKGLKLLYLFQNELSGVIPNELSSLRNLAKLDLSINNLTGPIPVGFQYLTQMFQLQLFDNRLTGRIPQALGLYSPLWVVDFSQNHLTGSIPSHICRRSNLILLNLESNKLYGNIPMGVLKCKSLVQLRLVGNSLTGSFPLELCRLVNLSAIELDQNKFSGLIPPEIANCRRLQRLHLANNYFTSELPKEIGNLSELVTFNISSNFLTGQIPPTIVNCKMLQRLDLSRNSFVDALPKELGTLLQLELLKLSENKFSGNIPAALGNLSHLTELQMGGNLFSGEIPPELGALSSLQIAMNLSYNNLLGRIPPELGNLILLEFLLLNNNHLSGEIPSTFGNLSSLMGCNFSYNDLTGPLPSIPLFQNMVSSSFIGNEGLCGGRLSNCNGTPSFSSVPPSLESVDAPRGKIITVVAAVVGGISLILIVIILYFMRRPVEVVASLQDKEIPSSVSDIYFPPKEGFTFQDLVEATNNFHDSYVVGRGACGTVYKAVMHSGQTIAVKKLASNREGNSIDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLLYEYMARGSLGELLHGASCSLEWQTRFTIALGAAEGLAYLHHDCKPRIIHRDIKSNNILLDSNFEAHVGDFGLAKVVDMPQSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRTPVQPLDQGGDLVSWVRNYIRDHSLTSEIFDTRLNLEDENTVDHMIAVLKIAILCTNMSPPDRPSMREVVLMLIESNEHEGYYISSPINDLPLKDDSS* 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0974 1109 PANTHER RECEPTOR-LIKE PROTEIN 55 465 1084 - -
Vvi5g0974 1109 Pfam Leucine rich repeat 512 571 IPR001611 GO:0005515
Vvi5g0974 1109 Gene3D Transferase(Phosphotransferase) domain 1 891 1097 - -
Vvi5g0974 1109 ProSiteProfiles Protein kinase domain profile. 813 1093 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0974 1109 SUPERFAMILY Protein kinase-like (PK-like) 788 1084 IPR011009 -
Vvi5g0974 1109 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 194 286 - -
Vvi5g0974 1109 Pfam Protein kinase domain 814 1081 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0974 1109 Gene3D Phosphorylase Kinase; domain 1 777 890 - -
Vvi5g0974 1109 SUPERFAMILY L domain-like 50 405 - -
Vvi5g0974 1109 Gene3D Ribonuclease Inhibitor 287 391 IPR032675 -
Vvi5g0974 1109 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 891 1098 - -
Vvi5g0974 1109 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 35 193 - -
Vvi5g0974 1109 Gene3D Ribonuclease Inhibitor 392 730 IPR032675 -
Vvi5g0974 1109 Gene3D Ribonuclease Inhibitor 35 187 IPR032675 -
Vvi5g0974 1109 ProSitePatterns Serine/Threonine protein kinases active-site signature. 934 946 IPR008271 GO:0004672|GO:0006468
Vvi5g0974 1109 SUPERFAMILY L domain-like 389 726 - -
Vvi5g0974 1109 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase isoform B 287 391 - -
Vvi5g0974 1109 SMART LRR_typ_2 199 223 IPR003591 -
Vvi5g0974 1109 SMART LRR_typ_2 367 390 IPR003591 -
Vvi5g0974 1109 SMART LRR_typ_2 247 271 IPR003591 -
Vvi5g0974 1109 SMART LRR_typ_2 103 127 IPR003591 -
Vvi5g0974 1109 SMART LRR_typ_2 607 631 IPR003591 -
Vvi5g0974 1109 SMART LRR_typ_2 295 319 IPR003591 -
Vvi5g0974 1109 SMART LRR_typ_2 511 535 IPR003591 -
Vvi5g0974 1109 SMART LRR_typ_2 656 679 IPR003591 -
Vvi5g0974 1109 Gene3D Ribonuclease Inhibitor 188 286 IPR032675 -
Vvi5g0974 1109 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 778 890 - -
Vvi5g0974 1109 Pfam Leucine rich repeat N-terminal domain 37 75 IPR013210 -
Vvi5g0974 1109 SMART serkin_6 813 1084 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0974 1109 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 415 729 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0974 Vvi-Chr5 11135141 11139306 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0974 36 1086 Receptor kinase-like Gene Family AT4G26540 38.282 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi5g0974 Pkinase 2.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0974 - - vvi:100245888 2147.47