Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0973 ATGGAGTCTTTGGACCCAGCAGCTTGTTTCGTGGACGACCTTCTGGACTTCTCGTCGGACATAGGCGAGGACGACGACGATGACCACAAAAGGAGAACCCGTTCTTCTTCTTCCCTCTTAGTTGGTGGTCATAGCCGTTCACTCCCTGATCCTCCTGTCGAGGAAGAGCTGGAATGGTTGAACAAAGACGTCTTCCCGGGCGTGGAGACATTCCTGGACTATCTTCCAACGAGCGTGGAAAACATTCCCAAGCAGCAGAGCCCAATTTCGGTGCTCGAGAACAGCAGCCACAGCAGTAGCAGCAATAACAGCAACAGCAGCACCACTACTATCATGAGCTGCTGCGAGAATTTCCGAGTGCCCAGCCGGGCAAGGAGCAAGCGCCGCCGCAGGCGCCACAAGGACTTCTCGGACATCCCGGGCCAGCCGTGGTGGTGGTGGAGTAGCCAGGGTAACACCAACGCCAACCACAGCAGCCCTACCAATAGCAAACAAACAATTACAAGCTCTACAATTGGGAGGAAGTGCCAGCATTGCCAAGCGGAGAAAACCCCCCAATGGCGGGCAGGCCCCCTCGGCCCCAAAACTCTCTGCAATGCTTGCGGGGTGCGGTACAAGTCTGGCCGCCTCGTGGCTGAGTATCGGCCGGCGAGCAGCCCGACTTTCTCAAGCAAGGTGCATTCTAATTCGCACAGGAAGATTATGGAAATGAGGAAGCTGAAGCAGAGGGATGTGGTGGTGAGGCCTTGTGGATAA 756 0.5595 MESLDPAACFVDDLLDFSSDIGEDDDDDHKRRTRSSSSLLVGGHSRSLPDPPVEEELEWLNKDVFPGVETFLDYLPTSVENIPKQQSPISVLENSSHSSSSNNSNSSTTTIMSCCENFRVPSRARSKRRRRRHKDFSDIPGQPWWWWSSQGNTNANHSSPTNSKQTITSSTIGRKCQHCQAEKTPQWRAGPLGPKTLCNACGVRYKSGRLVAEYRPASSPTFSSKVHSNSHRKIMEMRKLKQRDVVVRPCG* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0973 251 SMART GATA_3 170 220 IPR000679 GO:0006355|GO:0043565
Vvi5g0973 251 MobiDBLite consensus disorder prediction 86 109 - -
Vvi5g0973 251 ProSitePatterns GATA-type zinc finger domain. 176 201 IPR000679 GO:0006355|GO:0043565
Vvi5g0973 251 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 168 232 - -
Vvi5g0973 251 Pfam GATA zinc finger 176 209 IPR000679 GO:0006355|GO:0043565
Vvi5g0973 251 ProSiteProfiles GATA-type zinc finger domain profile. 170 206 IPR000679 GO:0006355|GO:0043565
Vvi5g0973 251 CDD ZnF_GATA 175 223 IPR000679 GO:0006355|GO:0043565
Vvi5g0973 251 PANTHER GATA TRANSCRIPTION FACTOR 11 242 - -
Vvi5g0973 251 MobiDBLite consensus disorder prediction 20 52 - -
Vvi5g0973 251 FunFam GATA transcription factor 164 249 - -
Vvi5g0973 251 Gene3D - 171 244 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0973 Vvi-Chr5 11066575 11068109 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0973 10 242 C2C2-Gata Transcription Factor Family AT3G24050 47.015 1.49e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vvi5g0973 GATA 2.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0973 - - vvi:100251019 452.595