Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0954 ATGATTGGCAGGTATGAGACCGAGGTTGTCAAGGAAATTGTTGATACAATCATTAGAAGATTAAACCATCAACCTTTAAGTGTGGGAAAGAACATAGTTGGAATTGGTGTTCATTTGGAAAAATTGAAATCGTTGATGAACACTGAGTTAAATATGGTTAGTGTCGTAGGGATATATGGAATTGGTGGGGTTGGCAAGACTACTATCGCCAAGGCTATTTATAATGAGATCTCACATCAATATGATGGTAGTAGCTTTCTTATAAATATCAAAGAGAGATCCAAAGGTGATATACTTCAGTTACAGCAAGAACTTCTTCATGGTATCCTAAGGGGAAAAAATTTTAAAATAAACAATGTTGATGAAGGAATTAGTATGATAAAGAGGTGTCTAAGCTCCAATAGAGTTCTTGTTATTTTTGATGATGTGGATGAGTTGAAACAACTAGAATATTTGGCTGAAGAGAAGGATTGGTTTCGGGCAAAAAGTACAATCATCATTACATCTAGAGACAAACATGTACTTGCTCAATATGGAGCGGATATACGATATGAGGTTTCAAAATTAAACAAGGAAGAAGCTATTGAGCTCTTTAGTTTGTGGGCCTTTAAACAAAATCGTCCCCAAGAAGTTTATAAAAATCTCTCATACAATATCATAGATTATGCTAATGGCCTTCCGTTAGCACTTAAAGTTTTAGGTGCTTCTCTTTTTGGAAAGAAAATAAGTAATTGGGAAAGTGCACTGTGTAAGCTAAAAATAATGCCCCACATGGAAATTCACAATGTACTTAGAATAAGTTTTGATGGACTCGATGATATAGACAAGGGGATATTTTTGGATGTTGCATGCTTTTTCAAAGGAGATGATAGAGATTTTGTTTCAAGAATATTGGGCCCTCATGCAAAGCACGCAATAACAACTCTAGATGATAGATGTCTCATAACTGTTTCAAAAAACATGCTAGATATGCATGATTTAATACAACAAATGGGTTGGGAGATTATTCGTCAAGAATGTCCGGAAGACCCTGGAAGAAGGAGTAGATTATGCGATTCTAATGCCTATCATGTGCTAACAGGAAATAAGGGGACACGAGCAATTGAAGGACTATTCTTAGATAGATGTAAATTTAATCCATCAGAGCTTACTACAGAATCTTTCAAAGAGATGAATAGACTTAGACTGCTCAAAATCCATAACCCTCGTAGAAAGCTATTTCTTAAAGACCACCTTCCAAGGGACTTTGAATTCTATTCCTATGAGTTAGCATATCTGCATTGGGATGGATACCCTTTAGAATCTTTGCCAATGAATTTTCATGCAAAGAACCTTGTTGAACTCTCATTAAGGGACAGCAATATAAAGCAAGTTTGGAGGGGCAATAAGGTATTGTTATTATTATTTAGTTACAACTTCTCAAGTGTGCCAAACTTGGAGATTCTAACTCTAGAAGGGTGTGTAAACCTGGAGCTTCTTCCAAGAGGCATTTACAAGTGGAAACACCTTCAAACTTTGTCTTGCAATGGCTGTTCAAAGCTAGAGAGATTTCCAGAAATCAAAGGCGATATGAGAGAGCTAAGGGTGCTTGATTTGAGTGGAACAGCTATAATGGACTTACCATCATCAATTACACATCTAAATGGTCTTCAAACTCTCCTACTTCAAGAGTGTTTAAAGCTCCACCAAATCCCTAATCATATTTGCCATTTATCATCATTGAAAGAATTGGACCTAGGTCACTGCAACATAATGGAAGGAGGAATTCCTAGTGATATTTGCCATTTATCATCATTACAGAAACTAAATCTGGAACAGGGTCATTTTAGTAGCATACCTACTACCATCAATCAGCTTTCCAGGCTGGAAGTCCTTAACCTTAGTCACTGCAACAATCTTGAACAAATTCCAGAGCTTCCATCACGTCTACGGCTTTTAGATGCACATGGTTCAAATCGCACTTCATCAAGAGCCCTGTTTTTGCCATTGCATTCTCTGGTCAATTGCTTCAGTTGGGCACAGGGTTTGAAACGCACTAGTTTTAGTGATTCTTCCTACCGTGGCAAGGGAACTTGCATTGTTCTTCCCAGAACTGATGGAATTCCAGAATGGATTATGGATCGGACAAAAAGATATTTTACAGAAACAGAGCTCCCTCAGAATTGGCACCAAAATAATGAGTTTTTGGGATTTGCTCTATGTTGTGTTTATGTTCCATTTGCTTACGAATCTGAGGACATACCTGAAAAGGAATCTGCACACGGGTCCAAGAATGAATCAGCTAATAAATCTGAGGATGAATCTGCTCATACATGGGAGAATGAAACAGACGATAAATCTGTGGCTGAATCTTTTCGTAAGAATGAACATAAACATACACATCCTTGTCGTCTTAGCTGTTGTTTGGATGTGGCTGGTGATGGAGTTGAATTGGTAGATCGTTCCTTCTTTCAATCCAATTGTTTTTGCTATAAAAAAGACAAGGACGAAGATAATGAGAGTGTATCAGGTCAGACGTGGGTGATTTGCTATCCCAAGGCAGTTATTCCGGAAAGGTTTTGCTCTGATCAACGGACTTTCATTGGGTTTTCCTTTTTCGACTTTTACATTAATTCTGAGAAAGTCTTGAAAGTAAAGGAGTGTGGAGTCCGCCTTATATACTCCCAAGACCTTCAACAAAGCCATGAGGATGCAGATATTAGAATATGCAGGGCATGCCAACGGGATGGGACACCTCGGCGGAAGTGCTGTTTTAAGGGCAGTGATATGAATGAAGTACCCATTATCGAGAATCCCTTGGAACTTGATAGTTTATGTCTGCGGGATTGCAGAAATCTTACGAGTCTGCCCAGTAGCATTTTTGGTTTCAAATCCCTTGCAACTCTCTCCTGCTCTGGCTGTTCACAACTAGAGAGCTTTCCAGAAATCCTGCAAGATATGGAGAGCTTGAGAAAGCTTTATTTAAATGGAACCGCCATAAAAGAGATACCATCATCAATTCAACGTCTAAGAGGGCTTCAATATTTGCTTCTGAGAAACTGCAAAAACCTTGTGAATCTTCCTGAGAGTATTTGTAATTTGACATCTTTTAAAACTCTCGTTGTCAGTCGCTGTCCAAACTTCAACAAATTGCCAGACAACTTGGGGAGACTGCAATCTTTAGAGTATCTTTTTGTTGGGCATTTAGATTCAATGAATTTTCAATTGCCGTCTTTGTCCGGTTTATGCTCCTTGAGGACGTTAAAGCTTCAAGGCTGCAATCTAAGGGAATTTCCCAGTGAAATCTATTACCTATCATCACTGGTAACATTATCTCTGGGGGGGAACCACTTTAGTCGCATACCTGATGGGATCAGTCAACTTTATAACCTAGAAAATCTTTACTTGGGTCACTGCAAGATGCTTCAACATATTCCAGAACTTCCATCAGGTTTATTTTGTCTAGATGCCCATCACTGCACATCCCTGGAAAATTTATCCAGTCGATCAAATCTACTCTGGTCTTCTTTATTCAAATGTTTTAAATCCCAAATTCAGGTATGGTTTTCATATAGCATTTAA 3561 0.383 MIGRYETEVVKEIVDTIIRRLNHQPLSVGKNIVGIGVHLEKLKSLMNTELNMVSVVGIYGIGGVGKTTIAKAIYNEISHQYDGSSFLINIKERSKGDILQLQQELLHGILRGKNFKINNVDEGISMIKRCLSSNRVLVIFDDVDELKQLEYLAEEKDWFRAKSTIIITSRDKHVLAQYGADIRYEVSKLNKEEAIELFSLWAFKQNRPQEVYKNLSYNIIDYANGLPLALKVLGASLFGKKISNWESALCKLKIMPHMEIHNVLRISFDGLDDIDKGIFLDVACFFKGDDRDFVSRILGPHAKHAITTLDDRCLITVSKNMLDMHDLIQQMGWEIIRQECPEDPGRRSRLCDSNAYHVLTGNKGTRAIEGLFLDRCKFNPSELTTESFKEMNRLRLLKIHNPRRKLFLKDHLPRDFEFYSYELAYLHWDGYPLESLPMNFHAKNLVELSLRDSNIKQVWRGNKVLLLLFSYNFSSVPNLEILTLEGCVNLELLPRGIYKWKHLQTLSCNGCSKLERFPEIKGDMRELRVLDLSGTAIMDLPSSITHLNGLQTLLLQECLKLHQIPNHICHLSSLKELDLGHCNIMEGGIPSDICHLSSLQKLNLEQGHFSSIPTTINQLSRLEVLNLSHCNNLEQIPELPSRLRLLDAHGSNRTSSRALFLPLHSLVNCFSWAQGLKRTSFSDSSYRGKGTCIVLPRTDGIPEWIMDRTKRYFTETELPQNWHQNNEFLGFALCCVYVPFAYESEDIPEKESAHGSKNESANKSEDESAHTWENETDDKSVAESFRKNEHKHTHPCRLSCCLDVAGDGVELVDRSFFQSNCFCYKKDKDEDNESVSGQTWVICYPKAVIPERFCSDQRTFIGFSFFDFYINSEKVLKVKECGVRLIYSQDLQQSHEDADIRICRACQRDGTPRRKCCFKGSDMNEVPIIENPLELDSLCLRDCRNLTSLPSSIFGFKSLATLSCSGCSQLESFPEILQDMESLRKLYLNGTAIKEIPSSIQRLRGLQYLLLRNCKNLVNLPESICNLTSFKTLVVSRCPNFNKLPDNLGRLQSLEYLFVGHLDSMNFQLPSLSGLCSLRTLKLQGCNLREFPSEIYYLSSLVTLSLGGNHFSRIPDGISQLYNLENLYLGHCKMLQHIPELPSGLFCLDAHHCTSLENLSSRSNLLWSSLFKCFKSQIQVWFSYSI* 1187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0954 1186 Gene3D - 188 272 IPR042197 -
Vvi5g0954 1186 Gene3D Ribonuclease Inhibitor 979 1179 IPR032675 -
Vvi5g0954 1186 Gene3D Ribonuclease Inhibitor 365 521 IPR032675 -
Vvi5g0954 1186 Gene3D Ribonuclease Inhibitor 522 672 IPR032675 -
Vvi5g0954 1186 Gene3D Ribonuclease Inhibitor 917 978 IPR032675 -
Vvi5g0954 1186 Pfam C-JID domain 700 891 IPR045344 -
Vvi5g0954 1186 MobiDBLite consensus disorder prediction 749 777 - -
Vvi5g0954 1186 ProSiteProfiles Leucine-rich repeat profile. 621 643 IPR001611 GO:0005515
Vvi5g0954 1186 SUPERFAMILY "Winged helix" DNA-binding domain 259 340 IPR036390 -
Vvi5g0954 1186 Gene3D - 20 184 IPR027417 -
Vvi5g0954 1186 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 281 IPR027417 -
Vvi5g0954 1186 SUPERFAMILY L domain-like 930 1161 - -
Vvi5g0954 1186 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 566 IPR044974 GO:0006952
Vvi5g0954 1186 SUPERFAMILY L domain-like 338 667 - -
Vvi5g0954 1186 Pfam NB-ARC domain 43 253 IPR002182 GO:0043531
Vvi5g0954 1186 PRINTS Disease resistance protein signature 223 237 - -
Vvi5g0954 1186 PRINTS Disease resistance protein signature 130 144 - -
Vvi5g0954 1186 PRINTS Disease resistance protein signature 617 633 - -
Vvi5g0954 1186 PRINTS Disease resistance protein signature 55 70 - -
Vvi5g0954 1186 SMART AAA_5 52 190 IPR003593 GO:0016887
Vvi5g0954 1186 SMART LRR_typ_2 524 547 IPR003591 -
Vvi5g0954 1186 SMART LRR_typ_2 980 1003 IPR003591 -
Vvi5g0954 1186 SMART LRR_typ_2 1098 1121 IPR003591 -
Vvi5g0954 1186 SMART LRR_typ_2 1075 1097 IPR003591 -
Vvi5g0954 1186 SMART LRR_typ_2 619 642 IPR003591 -
Vvi5g0954 1186 SMART LRR_typ_2 571 596 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0954 Vvi-Chr5 10720370 10724354 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0954 12 659 WRKY Transcription Factor Family AT4G12020 33.628 2.19e-80 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0954 - - vvi:100247669 2328.9