Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0952 ATGAATTTTCATGCAAAGAACCTTGTTGAACTCTTACTAAGGAACAACAATATAAAGCAACTTTGGAGAGGGAATAAGGTTATTGATCTCAGTTACTCTGTTCATCTCATCAAAATCCCAGACTTCTCAAGTGTGCCAAACTTGGAGATTCTAACTCTAGAAGGGTGTGTAAACCTGGAGCTTCTTCCAAGAGGCATTTACAAGTTGAAACACCTTCAAACTTTGTCTTGCAATGGCTGTTCAAAGCTAGAGAGATTTCCCAAAATCAAAGGCAATATGGGAAAGCTAAGGGTGCTTGATTTGAGTGGAATAGCTATAATGGACTTACCATCATCAATTTCACATCTAAATGGTCTTCAAACTCTCCTACTTGAAGACTGTTCAAAGCTCCACAAAATCCCTATTCATATTTGCCACTTATCATCATTGGAAGTATTGGACCTAGGAAACTGCAACATAATGGAAGGAGGAATTCCTAGTGATATTTGCCATTTATCATCATTACAGAAACTAAATCTGGAAGGGGGCCATTTCAGTTGCATACCTGCTACCATCAATCAGCTTTCAAGGCTGAAAGCCCTTAACTTAGTCACTGCAACAATCTTGAACAAATTCCAGAGCTTCCATCAACAGTTCTCATGGGGATTAGCTGTACAAGATACCAATAGTAATCATTCTCAGAGAAGCTGTGATACCAGATCAGCAGTAGAAGATACTAATACTGATGCCCAGAGAAGCTGTGATGGCGCAATGCAGAATATTGATGGTAATGGTGTTGATGCCCAAGACCATGAAATGGACCATATGCACAGGTGGCTGGAGCTTCTTTGCAAATTTGTCCATTGGATATGCTGTACAAGACGCTAA 867 0.3979 MNFHAKNLVELLLRNNNIKQLWRGNKVIDLSYSVHLIKIPDFSSVPNLEILTLEGCVNLELLPRGIYKLKHLQTLSCNGCSKLERFPKIKGNMGKLRVLDLSGIAIMDLPSSISHLNGLQTLLLEDCSKLHKIPIHICHLSSLEVLDLGNCNIMEGGIPSDICHLSSLQKLNLEGGHFSCIPATINQLSRLKALNLVTATILNKFQSFHQQFSWGLAVQDTNSNHSQRSCDTRSAVEDTNTDAQRSCDGAMQNIDGNGVDAQDHEMDHMHRWLELLCKFVHWICCTRR* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0952 288 Pfam Leucine Rich Repeat 142 165 IPR001611 GO:0005515
Vvi5g0952 288 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 75 171 - -
Vvi5g0952 288 Gene3D Ribonuclease Inhibitor 2 91 IPR032675 -
Vvi5g0952 288 Gene3D Ribonuclease Inhibitor 92 228 IPR032675 -
Vvi5g0952 288 SUPERFAMILY L domain-like 4 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0952 Vvi-Chr5 10681154 10684469 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0952 2 199 WRKY Transcription Factor Family AT4G12020 33.906 1.51e-19 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0952 - - vvi:100852779 342.043