Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0950 ATGAACACTAAGTTAAATATGGTTAGCGTCGTAGGGATATATGGAATTGGTGGGGTTGGCAAGACTACTATTGCCAAGGCTATTTATAATGAGACCTCAGATCAATATGATGGTAGGAGCTTTCTTAGAAATATCAGAGAGCGATCCAAAGGTGATATACTTCAGTTACAGCAAGAACTTCTTCATGGTATCCTAAGGGGAAAAAATTTTAAAATAAACAATGTTGATGAAGGAATTAGTATGATAAAGAGGTGTCTAACCTCCAATAGAGTTCTTGTTATTTTTGATGATGTGGATGAGTTGAAACAACTAGAATATTTGGCTGAAGAGAAAGATTGGTTTCATGCAAAAAGTACAATCATCATTACAACTAGAGACAAACACGTGCTTGCTCAATATGGAGCGGATATACCATATGAGGTTTCAAAATTAAACAAGGAAGAAGCTACTGAGCTCTTTAGTTTGTGGGCCTTTAAACAAAATCGTCCCCAAGAAGTTTATAAAAACCTCTCATACAATATCATAGATTATGCTAATGGCCTTCCGTTAGCACTTAAAGTTATAGGTGCTTCTCTTTTTGGAAAGAAAATAAGTCATTGGGAAAGTGCACTGTGTAAGCTAAAAATAATACCCCACAAGGAAATTCACAATGTACTTAGAATAAGTTTTGATGGACTCGATGATATAGACAAGGGGATGTTTTTGGATGTAGCATGCTTTTTCAAAGGAGATGACAAAGATTTTGTTTCAAGAATATTGGGCCCTCATGCAGAGCATGTAATAACAACTCTAGCTGATAGATGTCTTATAACTATTTCAAAAAACATGCTAGATATGCATGATTTAATACAACTAATGGGTTGGGAGGTTATTCGTCAAGAATGTCCTGAAGACCCTGGAAGAAGGAGTAGATTGTGGGATTCTAATGCCTATCACGTGCTAATAGGAAATACGGGGACAAGAGCAATTGAAGGACTATTCCTAGATAGATGTAAATTTAATCTATCACAGCTTACTACAAAATCTTTCAAAGAGATGAATAGACTTCGATTGCTCAAAATCCATAACCCTCGCAGAAAGTTATTTCTTGAAGACCACCTTCCAAGGGACTTTGAATTCTCTTCTTATGAGTTAACATATCTGCATTGGGATCGATACCCTTTAGAATCTTTGCCATTGAATTTTCATGCAAAGAACCTTGTTGAACTCTTACTGAGGAACAGCAATATAAAGCAACTTTGGAGAGGGAATAAGGTATTGCTATTATTATTTAGTTACAACTTCTCAAGTGTGCCAAACTTGGAGATTCTAACTCTAGAAGGATGTGTAAACCTGGAGCGTCTTCCAAGAGGCATTTACAAGTGGAAACACCTTCAAACTTTGTCTTGCAATGGCTGTTCAAAGCTAGAGAGATTTCCAGAAATCAAGGGCAATATGAGAGAGCTAAGGGTGCTTGATTTGAGTGGAACAGCTATAATGGACTTACCATCATCAATTACACATCTAAATGGTCTTCAAACTCTCCTACTTCAAGAGTGTGCAAAGCTCCACAAAATCCCTATTCATATTTGCCACTTATCATCATTGGAAGTATTGGACCTAGGTCACTGCAACATAATGGAAGGAGGAATTCCTAGTGATATTTGCCATTTATCATCATTACAGAAACTAAATCTGGAACGGGGTCATTTTAGTAGCATACCTACTACCATCAATCAGCTTTCCAGGCTGGAAGTCCTTAACCTTAGTCACTGCAGCAATCTTGAACAAATTCCAGAGCTTCCATCACGTCTACGGCTTTTAGATGCACACGGTTCAAATCGCACTTCATCAAGAGCCCCGTTTTTGCCATTGCATTCTCTGGTCAATTGCTTCAGTCGAGTACAGGATTCGAAACGCACTAGTTTTAGTGATTCTTTCTACCATGGCAAGGGAACTTGCATTTTTCTTCCCGGAGGACATACCCGAAAAGGAATCTGCACATGGGTCCGAGAATGA 1998 0.3799 MNTKLNMVSVVGIYGIGGVGKTTIAKAIYNETSDQYDGRSFLRNIRERSKGDILQLQQELLHGILRGKNFKINNVDEGISMIKRCLTSNRVLVIFDDVDELKQLEYLAEEKDWFHAKSTIIITTRDKHVLAQYGADIPYEVSKLNKEEATELFSLWAFKQNRPQEVYKNLSYNIIDYANGLPLALKVIGASLFGKKISHWESALCKLKIIPHKEIHNVLRISFDGLDDIDKGMFLDVACFFKGDDKDFVSRILGPHAEHVITTLADRCLITISKNMLDMHDLIQLMGWEVIRQECPEDPGRRSRLWDSNAYHVLIGNTGTRAIEGLFLDRCKFNLSQLTTKSFKEMNRLRLLKIHNPRRKLFLEDHLPRDFEFSSYELTYLHWDRYPLESLPLNFHAKNLVELLLRNSNIKQLWRGNKVLLLLFSYNFSSVPNLEILTLEGCVNLERLPRGIYKWKHLQTLSCNGCSKLERFPEIKGNMRELRVLDLSGTAIMDLPSSITHLNGLQTLLLQECAKLHKIPIHICHLSSLEVLDLGHCNIMEGGIPSDICHLSSLQKLNLERGHFSSIPTTINQLSRLEVLNLSHCSNLEQIPELPSRLRLLDAHGSNRTSSRAPFLPLHSLVNCFSRVQDSKRTSFSDSFYHGKGTCIFLPGGHTRKGICTWVRE* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0950 665 SMART LRR_typ_2 479 502 IPR003591 -
Vvi5g0950 665 SMART LRR_typ_2 551 574 IPR003591 -
Vvi5g0950 665 SMART LRR_typ_2 431 455 IPR003591 -
Vvi5g0950 665 SMART LRR_typ_2 526 550 IPR003591 -
Vvi5g0950 665 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 6 520 IPR044974 GO:0006952
Vvi5g0950 665 Gene3D - 143 227 IPR042197 -
Vvi5g0950 665 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 236 IPR027417 -
Vvi5g0950 665 Gene3D Ribonuclease Inhibitor 320 477 IPR032675 -
Vvi5g0950 665 Gene3D Ribonuclease Inhibitor 478 629 IPR032675 -
Vvi5g0950 665 Gene3D - 1 136 IPR027417 -
Vvi5g0950 665 PRINTS Disease resistance protein signature 10 25 - -
Vvi5g0950 665 PRINTS Disease resistance protein signature 572 588 - -
Vvi5g0950 665 PRINTS Disease resistance protein signature 85 99 - -
Vvi5g0950 665 PRINTS Disease resistance protein signature 178 192 - -
Vvi5g0950 665 SUPERFAMILY L domain-like 291 621 - -
Vvi5g0950 665 Pfam NB-ARC domain 9 208 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0950 Vvi-Chr5 10628176 10630754 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0950 8 625 WRKY Transcription Factor Family AT5G45050 33.040 7.95e-84 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0950 - - vvi:100247669 1175.61