Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0949 ATGAGAAAATTAATTTCATACATGATGGTGTGTAAACCTGGAGCTTCTTCCAGGAGGCATTTACAAGTTGAAACACCTTCAAACTTTGTCTTGCAATGGCTGTTCAAAGCTAGAGAGATTTCCAGAAATCATGGCCAATATGAGAAAGCTAAGGGTCTTCAAACTCTCCTACTTCAAGAGTGTTCAAAGCTCCACCAAATCCCTAGTCATATTTGCTATTTATCATCATTACAGAAACTAAATCTGGAAGGGGGCCATTTTAGTAGCATACCTCCTACCATCAATCAGCTTTCCAGGCTGAAAGCCCTTAACCTTAGTCACTGCAACAATCTTGAACAAATTCCAGAGCTTCCATCACGTCTACAGCTTTTAGATGCACATGGTTCAAATCACACTTCATCAAGAGCCCCGTTTTTGCCATTGCATTCTCTGGTCAATTGTTTCAGTTGGGCACAGGATTCGCAACTCACTAGTTTTAGTGATTCTTCCTACCATGGCAAGGGAACTTGCATTTTTCTTCCCGGAAGTGATGGAATTCCAGAATGGATTATGGGTCGGACAAATAGACATTTTACAAGAACAGAGCTCCCTCAGAATTGGCACCAAAATAATGAGTTTTTGGGATTTGCTATATGCTGTGTTTATGTTCCACTTGCTTACGAATCTGAGGACATACCCGAAAAAGAATCTGCTCACGGGTCCAAGATTGAATCAGACAATAAATCTGAGGATGAATCTGCTCATACAAGGGAGAATGAAACAGACCATAAATCTGTGGCTGAATCTTTTCGTAAGAATGAACATAAACATAGACATTCTTGTTGTCTGCAGTGTGATTTGGTTATCATTGGTGATGGAGTTGAATTGGTAGATCGTTCCTTGTTTCAATCCAATTGTTTTTGCTATAAAGAAGAGAAGGACGAAGATAATGAGAGTGTATCAGGTCAGACGTGGGTGATTTGCTATCCCAAGGCAGCCATTCCGGAAAGGTTTTGCTCTGATCAATGGACTCGCCTTAGGTTTGTCTTTTTCGACTTTTACGTTAATTCTGAGAAAGTCTTGAAAGTAAAGGAGTGTGGAGTCCGCCTTATATACTCCCAAGACCTTCAACAAAGCCATGAGGATGCAGATATTAGAATATGCAGGGCATGCCAACGGGATGGGACGCTTCGGCGGAAGTGCTGTTTTAAGGGCAGTGATATGAATGAAGTACCCATTATCAAGAATCCCTCGGAACTTGATAGTTTATGTCTGCGGGATTGCAGAAATCTTACGAGTCTGCCCAGTAGCATTTTTGGTTTCAAATCCCTTGCAACTCTCTCCTGCTCTGGCTGTTCACAACTAGAGAGCTTTCCAGAAATCCTGCAAGATATGGAGAGCTTGAGAAAGCTTTATTTAAATGGAACCGCCATAAAAGAGATACCATCATCAATTGAACGTCTAAGAGGGCTTCAATATTTGCTTCTGAGAAACTGCAAAAACCTTGTGAATCTTCCCGAGAGTATTTGTAATTTGACATCTTTTAAAACTCTGGTTGTCGAAAGCTGTCCAAACTTCAAGAAATTGCCAGACAACTTGGGGAGACTACAATCTTTACTTCATCTTAGTGTTGGGCATTTAGATTCAATGAATTTTCAATTGCCGTCTTTGTCCGGTTTATGCTCCTTGAGGACATTAAGGCTTAAAGGCTGCAATCTAAGGGAATTTCCCAGTGAAATTTATTACCTATCATCACTGGTAACATTATCTCTGAGGGGGAACCACTTTAGTCGCATACCTGATGGGATCAGTCAACTTTATAACCTAGAACATCTTGACTTGGGTCACTGCAAGATGCTTCAACATATTCCAGAACTTCCATCAGGTTTAAGGTGTCTAGATGCCCATCACTGCACATCCCTGGAAAATTTATCCAGTCAATCAAATCTACTCTGGTCTTCTTTATTCAAATGTTTTAAATCCCAAATTCAGGTATGGTTTTCATATATCATTTAA 1995 0.4035 MRKLISYMMVCKPGASSRRHLQVETPSNFVLQWLFKAREISRNHGQYEKAKGLQTLLLQECSKLHQIPSHICYLSSLQKLNLEGGHFSSIPPTINQLSRLKALNLSHCNNLEQIPELPSRLQLLDAHGSNHTSSRAPFLPLHSLVNCFSWAQDSQLTSFSDSSYHGKGTCIFLPGSDGIPEWIMGRTNRHFTRTELPQNWHQNNEFLGFAICCVYVPLAYESEDIPEKESAHGSKIESDNKSEDESAHTRENETDHKSVAESFRKNEHKHRHSCCLQCDLVIIGDGVELVDRSLFQSNCFCYKEEKDEDNESVSGQTWVICYPKAAIPERFCSDQWTRLRFVFFDFYVNSEKVLKVKECGVRLIYSQDLQQSHEDADIRICRACQRDGTLRRKCCFKGSDMNEVPIIKNPSELDSLCLRDCRNLTSLPSSIFGFKSLATLSCSGCSQLESFPEILQDMESLRKLYLNGTAIKEIPSSIERLRGLQYLLLRNCKNLVNLPESICNLTSFKTLVVESCPNFKKLPDNLGRLQSLLHLSVGHLDSMNFQLPSLSGLCSLRTLRLKGCNLREFPSEIYYLSSLVTLSLRGNHFSRIPDGISQLYNLEHLDLGHCKMLQHIPELPSGLRCLDAHHCTSLENLSSQSNLLWSSLFKCFKSQIQVWFSYII* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0949 664 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 434 553 - -
Vvi5g0949 664 ProSiteProfiles Leucine-rich repeat profile. 99 121 IPR001611 GO:0005515
Vvi5g0949 664 Pfam C-JID domain 177 369 IPR045344 -
Vvi5g0949 664 Gene3D Ribonuclease Inhibitor 20 157 IPR032675 -
Vvi5g0949 664 SUPERFAMILY L domain-like 48 145 - -
Vvi5g0949 664 Gene3D Ribonuclease Inhibitor 389 660 IPR032675 -
Vvi5g0949 664 SMART LRR_typ_2 74 97 IPR003591 -
Vvi5g0949 664 SMART LRR_typ_2 576 599 IPR003591 -
Vvi5g0949 664 SMART LRR_typ_2 458 481 IPR003591 -
Vvi5g0949 664 SMART LRR_typ_2 553 575 IPR003591 -
Vvi5g0949 664 MobiDBLite consensus disorder prediction 226 259 - -
Vvi5g0949 664 Pfam Leucine rich repeat 555 611 IPR001611 GO:0005515
Vvi5g0949 664 SUPERFAMILY L domain-like 392 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0949 Vvi-Chr5 10613066 10624943 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0949 416 582 WRKY Transcription Factor Family AT4G12020 35.329 9.02e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0949 - - vvi:100247669 1083.55