Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0948 ATGGCTTCTTCCAGCACCCATAGAGCCTCTTCTTCGACTACTTCTATTTCTCGTAATTATGATGTGTTCTTGAGTTTTAGAGGTGGCGATACTCGCAAAAATTTCACTGATCATCTATATACCACATTGACTGCATCTGGAATTCAAACTTTCAGAGATGATGAAGAACTTGAGAAAGGAGGAGATATTGCATCTGATCTCTTGAGAGCTATAGAAGAATCGAGGTTTTTTATTATTATTTTCTCAAAAAATTATGCTTACTCCAGATGGTGTTTAAATGAACTCGTAAAGATCATTGAACGCAAGAGCCAAAAGGAATCAATGGTTCTACCAATTTTCTACCATGTGGATCCATCTGATGTACGAAACCAAAGGGGAAGTTTCGGAGACGCACTTGCCTACCATGAAAGAGATGCAAATCAAGAAAAGAAGGAGATGATACAAAAGTGGAGGATTGCCTTGAGAGAAGCAGCTAATCTATCTGGATGCCATGTGAATGACCAGTATGAGACTGAGGTTGTCAAGGAAATTGTTGATACAATCATTAGAAGATTAAACCATCAACCTTTAAGTGTGGGAAAGAGCATAGTTGGAATTGGTGTTCATTTGGAAAAATTGAAATCGTTGATGAACACTGAGTTAAATATGGTTAGCGTCATAGGGATATATGGAATTGGTGGGGTTGGCAAGACTACTATCGCCAAGGCTATTTATAATGAGATCTCACATCAATATGATGGTAGTAGCTTTCTTATAAATATCAAAGAGAGATCCAAAGGTGATATACTTCAGTTACAGCAAGAACTTCTTCATGGTATCCTAAGGGGAAAATTTTTTAAAATAAACAATGTTAATGAAGGAAATAGTATGATAAAGAGGTGTCTAAGGTCCAATAGAGTTCTTGTTATTTTTGATGATGTGGATGAGTTGAAACAACTAGAATATTTGGCTGAAGAGAAAGATTGGTTTCATGCAAAAAGTACAATCATCATTACATCTAGAGACAAACACGTGCTTGCTCAATATGGAGTGGATATACCATATGAGGTTTCAAAATTAAACAAGGAAGAAGCTATTGAGCTCTTTAGTTTGTGGGCCTTTAAACAAAATCGTCCCCAAGAAGTTTATAAAAACCTCTCATACAATATCATAGATTATGCTGATGGCCTTCCGTTAGCACTTAAAGTTTTAGGTGCTTCTCTTTTTGGAAAGAAAATAAGTAATTGGGAAAGTGCACTGTGTAAGCTAAAAATAATACCCCACATGGAAATTCACAATGTACTTAGAATAAGTTTTGATGGACTTGATGATATAGAAAAGGGGATATTTTTGGATATTGCATGCTTTTTCAAAGGAGATGATAGAGATTTTGTTTCAAGAATATTGGGCCCTCATGCAGAGCATGCAATAACAACTCTAGATGATAGATGTCTCATAACTGTTTCAAAAAACATGCTAGATATGCATGATTTAATACAACAAATGGGTTGGGAGATTATTCGTCAAGAATGCCCTGAAGACCCTGGAAGAAGGAGTAGATTGTGGGATTCTAATGCCAATGATGTGCTAATAAGAAATAAAGGGACACGAGCAATTGAAGGACTATTCTTAGATAGATGTAAATTTAATCCATTACAGATTACTACAGAATCTTTCAAAGAGATGAATAGACTTAGACTGCTTAATATCCATAACCCTCGTGAAGACCAGCTATTTCTTAAAGACCATCTTCCAAGGGACTTTGAATTCTCTTCTTATGAGTTAACATATCTGCATTGGGATGGATACCCTTTAGAATCTTTGCCAATGAATTTTCACGCAAAGAACCTTGTTCAACTCGTATTAAGAGGCAGCAATATAAAGCAAGTTTGGAGAGGGAATAAGCTTCATGACAAGTTGAGGGTTATTGATCTCAGTTACTCTTTCCATCTCATCGGAATCCCAGACTTCTCAAGTGTGCCAAACTTAGAGATTCTAATTCTAATAGGGTGTGTAAACTTGGAGCTTCTTCCAAGAAACATTTACAAGTTGAAACACCTTCAAATTTTGTCTTGCAATGGCTGTTCAAAGCTAGAGAGATTTCCAGAAATCAAGGGCAATATGAGAAAGCTAAGGGTACTTGATTTGAGTGGAACAGCTATAATGGACTTACCATCATCAATTACACATCTAAATGGTCTTCAAACTCTCCTACTTCAAGAGTGTTCAAAGCTCCACAAAATCCCTATTCATATTTGCCACTTATCATCATTGGAAGTATTGGACCTAGGTCACTGCAACATAATGGAAGGAGGAATTCCTAGTGATATTTGCCATTTATCATCATTACAGAAACTAAATCTGGAACGGGGCCATTTTAGTAGCATACCCACTACCATCAATCAGCTTTCCAGCTTGGAAGTCCTTAACCTTAGTCACTGCAACAATCTTGAACAAATTACAGAGCTTCCATCATGTCTACGGCTTTTAGATGCACACGGTTCAAATCGCACTTCATCAAGAGCCCCGTTTTTGCCATTGCATTCTCTGGTCAATTGCTTCCGTTGGGCGCAGGATTGGAAGCACACTAGTTTTAGGGATTCTTCCTACCATGGCAAGGGAACTTGTATTGTTCTTCCCGGAAGTGATGGAATTCCCGAATGGATATTGAATCGGGGAGATAATTTTTCTAGCGTAATAGAGCTCCCTCAGAATTGGCACCAAAATAATGAGTTTTTGGGATTTGCTATATGCTGTGTTTATGTTCCACTCTCTGATGAATCTGAGGACATACCCGAAAAGGAATCTGCACATGGGCCCGAGAATGAATCAGACAATAAATCTGAGGATGAATCTACTCATTCATGGGAGAATGAAAGAGATGATAAATCTGTGGCTGAATCTTTTCATAAGAATGAACATAAACATACACATTCTTGTCGTCTGGAGTGTTTTCTGGGTGCTCTTGGTGATAGTTTTGATTTTCAATTTGTAGATCGTCCCGGCTTTCAATCCACTTGTTTTTGCTATAAAGAAGACAAGGGCGAAGATAATGAGAGTGTATCAGGTCAAACGTGGGTGGTTTGCTATTCCAAGGCGGCTATTCCGGAAATGTTTCACTCTTATCAATTGACTGATATTTTGGCTCGATTTCACATTTATTCTGAAAAAGCCTTGAAAGTGAAGGAGTGTGGAGTCCGCCTAATATACTCCCAAGACCTTCAACAAAGCCACGAGGATGCAGATGTTAGAATATGCAGAGCATGCCGACAGGATGGGACGCTTCGACGGAAGTGCTGTTTTAAGGGCAGTGATATGAATGAAGTACCCATTATCGGGAATCCCTTGGAACTTGATAGCTTATGTCTGCGGGATTGCAAAAATCTTACGAGTCTGCCCAGTAGCATTTTTGGTTTCAAATCCCTTGCAACTCTCTCCTGCTCTGGCTGTTCACAACTAGAGAGCATTCCAGAAATCCTGCAAGATATGGAGAGCTTGAGAAAGCTTTCTTTAAGTGGAACCGCCATAAAAGAGATACCATCATCAATTCAACGTCTAAGAGGGCTTCAATATTTGCTTCTGTCAAACTGCAAAAACCTTGTGAATCTTCCCGAGAGTATTTGTAATTTGACATCTTTGAAATTTCTCATTGTCGAAAGCTGTCCTAGCTTCAAGAAATTGCCAGACAACTTGGGGAGACTACAATCTTTACTTCATCTTAGTGTTGGGCCTTTAGATTCAATGAATTTTCAATTGCCTTCTTTGTCCGGTTTATGCTCCTTGAGGCAATTAGAGCTTCAAGCCTGCAATATAAGGGAAATTCCCAGTGAAATTTGTTACCTATCATCACTGATGCCCATCACTGTACATCCTTGGAAAATTTATCCAGTCAATCAAATCTACTCTGGTCTTCTTTATTCAAATGTTTTAAATTCAAAATTCAGGTATGGTTTTCATATATCATTTAACCTTTCTTTTTCTATAGACAAAATTCAGAGGGTAATTTTTGTGCAGGGGCGTGAATTTAGAAGAAGTGTCAGAACTTTTTTTGCTGAAAGTAATGGGATTCCGGAGTGGATAAGCCATCAGAAAAGCGGGTTCAAAATAACAATGAAACTTCCTTGGAGTTGGTATGAAAACGATGACTTCTTGGGCTTTGTTCTGTGCTCTCTTTATGTTCCACTTGAGATTGAGACCAAAACACATAGGATTTTCAGCTGTATATTGAATTTCGGTGATGATAGTGATTCTTTTCTCTTTGATGATCTGCGATTGGAACAAATTTGTGAATGCTGCTATTATGAAGATGCATCAAATCAAGGGTTGTTGGTATATTATTCTAAGTCGGATATTCCCGAGAAATTTCACTCAAATGAATGGAGAACCTTGAACGCTTCATTTAATGTCTACTTTGGTATTAAACCAGTGAAAGCGGCGAGGTGTGGCTTCCACTTTCTATATGCCCACGATTATGAACAGAACAATCTCACAATGGTACAAGGTAAGAAGCTGTGA 4494 0.381 MASSSTHRASSSTTSISRNYDVFLSFRGGDTRKNFTDHLYTTLTASGIQTFRDDEELEKGGDIASDLLRAIEESRFFIIIFSKNYAYSRWCLNELVKIIERKSQKESMVLPIFYHVDPSDVRNQRGSFGDALAYHERDANQEKKEMIQKWRIALREAANLSGCHVNDQYETEVVKEIVDTIIRRLNHQPLSVGKSIVGIGVHLEKLKSLMNTELNMVSVIGIYGIGGVGKTTIAKAIYNEISHQYDGSSFLINIKERSKGDILQLQQELLHGILRGKFFKINNVNEGNSMIKRCLRSNRVLVIFDDVDELKQLEYLAEEKDWFHAKSTIIITSRDKHVLAQYGVDIPYEVSKLNKEEAIELFSLWAFKQNRPQEVYKNLSYNIIDYADGLPLALKVLGASLFGKKISNWESALCKLKIIPHMEIHNVLRISFDGLDDIEKGIFLDIACFFKGDDRDFVSRILGPHAEHAITTLDDRCLITVSKNMLDMHDLIQQMGWEIIRQECPEDPGRRSRLWDSNANDVLIRNKGTRAIEGLFLDRCKFNPLQITTESFKEMNRLRLLNIHNPREDQLFLKDHLPRDFEFSSYELTYLHWDGYPLESLPMNFHAKNLVQLVLRGSNIKQVWRGNKLHDKLRVIDLSYSFHLIGIPDFSSVPNLEILILIGCVNLELLPRNIYKLKHLQILSCNGCSKLERFPEIKGNMRKLRVLDLSGTAIMDLPSSITHLNGLQTLLLQECSKLHKIPIHICHLSSLEVLDLGHCNIMEGGIPSDICHLSSLQKLNLERGHFSSIPTTINQLSSLEVLNLSHCNNLEQITELPSCLRLLDAHGSNRTSSRAPFLPLHSLVNCFRWAQDWKHTSFRDSSYHGKGTCIVLPGSDGIPEWILNRGDNFSSVIELPQNWHQNNEFLGFAICCVYVPLSDESEDIPEKESAHGPENESDNKSEDESTHSWENERDDKSVAESFHKNEHKHTHSCRLECFLGALGDSFDFQFVDRPGFQSTCFCYKEDKGEDNESVSGQTWVVCYSKAAIPEMFHSYQLTDILARFHIYSEKALKVKECGVRLIYSQDLQQSHEDADVRICRACRQDGTLRRKCCFKGSDMNEVPIIGNPLELDSLCLRDCKNLTSLPSSIFGFKSLATLSCSGCSQLESIPEILQDMESLRKLSLSGTAIKEIPSSIQRLRGLQYLLLSNCKNLVNLPESICNLTSLKFLIVESCPSFKKLPDNLGRLQSLLHLSVGPLDSMNFQLPSLSGLCSLRQLELQACNIREIPSEICYLSSLMPITVHPWKIYPVNQIYSGLLYSNVLNSKFRYGFHISFNLSFSIDKIQRVIFVQGREFRRSVRTFFAESNGIPEWISHQKSGFKITMKLPWSWYENDDFLGFVLCSLYVPLEIETKTHRIFSCILNFGDDSDSFLFDDLRLEQICECCYYEDASNQGLLVYYSKSDIPEKFHSNEWRTLNASFNVYFGIKPVKAARCGFHFLYAHDYEQNNLTMVQGKKL* 1498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0948 1497 Gene3D - 16 186 IPR035897 -
Vvi5g0948 1497 Pfam NB-ARC domain 207 417 IPR002182 GO:0043531
Vvi5g0948 1497 Gene3D Ribonuclease Inhibitor 1089 1297 IPR032675 -
Vvi5g0948 1497 Gene3D - 187 346 IPR027417 -
Vvi5g0948 1497 Pfam TIR domain 19 191 IPR000157 GO:0007165
Vvi5g0948 1497 SMART LRR_typ_2 1251 1274 IPR003591 -
Vvi5g0948 1497 SMART LRR_typ_2 701 724 IPR003591 -
Vvi5g0948 1497 SMART LRR_typ_2 1179 1203 IPR003591 -
Vvi5g0948 1497 SMART LRR_typ_2 773 796 IPR003591 -
Vvi5g0948 1497 SMART LRR_typ_2 748 772 IPR003591 -
Vvi5g0948 1497 SMART LRR_typ_2 1156 1178 IPR003591 -
Vvi5g0948 1497 MobiDBLite consensus disorder prediction 923 957 - -
Vvi5g0948 1497 ProSiteProfiles TIR domain profile. 18 185 IPR000157 GO:0007165
Vvi5g0948 1497 SUPERFAMILY L domain-like 488 842 - -
Vvi5g0948 1497 Gene3D - 352 436 IPR042197 -
Vvi5g0948 1497 PRINTS Disease resistance protein signature 387 401 - -
Vvi5g0948 1497 PRINTS Disease resistance protein signature 219 234 - -
Vvi5g0948 1497 PRINTS Disease resistance protein signature 294 308 - -
Vvi5g0948 1497 PRINTS Disease resistance protein signature 794 810 - -
Vvi5g0948 1497 Gene3D Ribonuclease Inhibitor 700 846 IPR032675 -
Vvi5g0948 1497 Gene3D Ribonuclease Inhibitor 530 699 IPR032675 -
Vvi5g0948 1497 ProSiteProfiles Leucine-rich repeat profile. 798 820 IPR001611 GO:0005515
Vvi5g0948 1497 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 162 IPR035897 -
Vvi5g0948 1497 SMART till_3 19 160 IPR000157 GO:0007165
Vvi5g0948 1497 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 187 - -
Vvi5g0948 1497 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 742 IPR044974 GO:0006952
Vvi5g0948 1497 SUPERFAMILY L domain-like 1095 1287 - -
Vvi5g0948 1497 Pfam C-JID domain 1346 1484 IPR045344 -
Vvi5g0948 1497 Pfam C-JID domain 876 1067 IPR045344 -
Vvi5g0948 1497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 446 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0948 Vvi-Chr5 10572519 10578136 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0948 15 802 WRKY Transcription Factor Family AT4G12020 31.846 3.66e-98 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0948 - - vvi:100852779 2882.82