Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0946 ATGCTAGCGAAATCGAAGGAGTTTCCTGTGATTGGGTTTGATATCGTGTACGAAGCTACACAGCATTTCTCTAATGACAACAAGCTCGGGGAAGGTGGGTTCGGCCCAGTTTATAAGGGGACATTGTCAGATGGAAAGGAAATTGCTGTTAAGAGGCTTTCCAGCACTTCTGGCCAAGGATTACAGGAGTTCAAGAATGAAGTTATTCTGATTGCCAAACTACAACATAGAAACCTTGTGAGACTCTTGGGTTGCTGCTTAGAGGGAAATGAATTGTTGCTCATTTATGAATATATGCCCAACAAAAGCTTAGATTTCTTCCTTTTTGATTCAACTAGAGGTTTGGAACTAGATTGGAAAACACGATTTAGCATCATTAATGGAATTGCTCGGGGCATTTCATATTTGCATGAGGATTCTCGCCTTAGGATCATCCATAGGGACTTAAAGCCTAGCAATATTTTATTGGATGGTGACATGAATCCGAAGATATCGGACTTCGGGTTGGCAAGGATCTTTGCAGGAAGTGAGAATGGAACTAACACTGCTAAAATAGTGGGATCATATGGATACATGGCTCCAGAGTATGCTATGGAAGGGCTATACTCCAATAAGTCTGATGTTTTCAGTTTTGGAGTTGTCTTGCTTGAGATCATAACTGGGAGAAAGAATGCTGGTTTCCATCTCTCTGGAATGGGTCTAAGCCTCCTATCATATGCATGGCAACTATGGAATGAAGGAAAAGGGTTGGAGCTGATGGATCCATTATTGGGTGATTCATGTTGCCCAGATGAATTTTTGAGATGCTACCATATTGGGTTATTGTGTGTCCAGGAAGATGCATTTGACAGGCCAACCATGTCATCTGTAATTATCATGTTAAGAAGCGAAAGCCTAACCCTTCGACAGCCTGAACGACCTGCCTTCTCTGTGGGGAGATTCGCCAATAACCAAGAAATAGCAAGTGGTAGCAGTTCTTCTGTCAATGGTCTAACAGCTTCTACTACTGTGCCTCGATGA 1020 0.4235 MLAKSKEFPVIGFDIVYEATQHFSNDNKLGEGGFGPVYKGTLSDGKEIAVKRLSSTSGQGLQEFKNEVILIAKLQHRNLVRLLGCCLEGNELLLIYEYMPNKSLDFFLFDSTRGLELDWKTRFSIINGIARGISYLHEDSRLRIIHRDLKPSNILLDGDMNPKISDFGLARIFAGSENGTNTAKIVGSYGYMAPEYAMEGLYSNKSDVFSFGVVLLEIITGRKNAGFHLSGMGLSLLSYAWQLWNEGKGLELMDPLLGDSCCPDEFLRCYHIGLLCVQEDAFDRPTMSSVIIMLRSESLTLRQPERPAFSVGRFANNQEIASGSSSSVNGLTASTTVPR* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0946 339 Pfam Protein tyrosine and serine/threonine kinase 26 291 IPR001245 GO:0004672|GO:0006468
Vvi5g0946 339 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Vvi5g0946 339 ProSiteProfiles Protein kinase domain profile. 23 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0946 339 CDD STKc_IRAK 29 294 - -
Vvi5g0946 339 FunFam Liguleless narrow1 99 302 - -
Vvi5g0946 339 PIRSF ILK 258 306 - -
Vvi5g0946 339 PIRSF ILK 13 234 - -
Vvi5g0946 339 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 2 98 - -
Vvi5g0946 339 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Vvi5g0946 339 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 6 332 - -
Vvi5g0946 339 Gene3D Transferase(Phosphotransferase) domain 1 99 306 - -
Vvi5g0946 339 SMART serkin_6 23 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0946 339 SUPERFAMILY Protein kinase-like (PK-like) 9 294 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0946 Vvi-Chr5 10537283 10538830 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0946 11 311 Receptor kinase-like Gene Family AT4G23230 58.472 4.02e-131 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi5g0946 PK_Tyr_Ser-Thr 3.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0946 - - vvi:100852713 677.167