Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0939 ATGCAGTCTGTTCCAGTCAAAGTAGTGGTTGGGTCTCACGTTTGGGTGGAGGACCCTGAGATAGCTTGGATAGATGGAGAAGTTGTGGAAGTTAATGGTGAAGAAATTAAAATAATCTGTACATCAGGGAAGACGATTGTTGCCAATCCATCCGATGTCTACCCAAAAGATACTGAAGCTCCTCCACATGGCATCGATGATATGACAAAGCTGGCTTATCTGCACGAACCAGGGGTTCTGCAGAATTTGAGATGTCGATATGATATTAATGAAATTTATACTTATACAGGAAGTATATTGATTGCCGTGAACCCTTTTCAGAGACTGCCTCATTTGTATGATAATCATGTGATGGAGCAGTATAAAGGGGCAGTCTTTGGTGAGCTGAGCCCACATCCTTTTGCTGTTGCTGATTCTGCTTACCGACTGATGATTAATGACGGAGTGAGCCAGTCCATTTTGGTAAGTGGAGAAAGCGGAGCTGGTAAGACAGAAAGCACGAAAATGCTTATGCAATATCTTGCCTATATGGGTGGGAGGGCTGCAGCTGAGGGGCGGACAGTGGAGCAGCAAGTCTTAGAGTCCAATCCTGTTCTAGAAGCGTTTGGTAATGCAAAGACTGTCAGAAACAATAACTCTAGTCGATTTGGTAAGTTCGTGGAGATTCAGTTTGATCAAAGGGGAAGGATTTCAGGAGCTGCTATCAGGACTTATTTACTGGAGCGATCTCGTGTTTGTCAAGTATCCGATCCTGAGAGAAATTATCATTGCTTTTATATGCTTTGTGCTGCACCACCTGAGGATGTTGAGAAGTACAAATTGGGAGATCCAAGAACATTTCACTATCTAAATCAGTCAAATTGTTATGAGTTAGATGGAGTGAATGATTCAAAAGAGTACCTTGCAACTAGGAGAGCCATGAATGTTGTTGGGATCAGTTCTGTTGAGCAGGATGCAATATTCCGAGTTGTGGCTGCAGTTCTCCATTTAGGCAACATTGAGTTTGCAAAGGGACAGGAAATAGATTCTTCTGAACCGAAGGATGATAAATCTCGGTTCCATCTTAGAATGGCAGCTGAGCTTTTTATGTGTGATGAGAAGTCTCTTGAGGACTCCCTCTGCAAACGTGTGATTGTGACTCGTGATGAGACCATAACAAAATGGCTTGATCCGGACTCCGCAGCTGTCAGTAGAGATGCTCTGGCCAAAATTGTTTATTCCAGATTATTTGATTGGATTGTGGACAAGATCAATAATTCTATTGGGCAAGATCCTGATTCAAAAGTCTTAATTGGGGTTCTGGATATTTATGGATTTGAGAGTTTCAAGACAAACAGTTTTGAGCAATTTTGTATCAATTTGACAAATGAGAAACTGCAGCAACATTTCAATCAGCATGTATTCAAGATGGAACAAGAAGAATATACAAAAGAAGAAATTGACTGGAGTTATATAGATTATGTTGATAATCAAGATATTCTTGATCTCATTGAGAAGAAACCTGGTGGCATCATTGCTCTTCTGGATGAGGCATGTATGTTTCCAAGGTCAACGCATGAGACATTTTCACAGAAGCTTTACCAAACATTTAAAAGTCATAAACGCTTCAGCAAGCCAAAGTTGTCACCTACTGACTTCACCATTTATCACTATGCTGGTGATGTCACATATCAAACTGAGCACTTCCTGGATAAAAACAAAGATTATGTTGTTGCTGAGCATCAATCACTTCTGAGTGCTTCCAGGTGCTCCTTCGTGGCAGACTTGTTCCCACCTTTACCAGAGGAGTCTTCCAAAACATCGAAGTTCTCATCAATAGGTTCTCGGTTTAAGCAACAATTGCAATCTTTGCTTGAAACACTGAGTGCCACTGAGCCACATTACGTTCGCTGTGTGAAGCCAAATAATCTTCTTAAGCCATCAATCTTTGAGAATAATAATGTTCTACAGCAACTACGTTGTGGGGGTGTCTTGGAAGCAATTAGGATCAGTTGTGCTGGATTTCCCACAAGAAGAACATTTGTTGAGTTCATTGCTCGTTTTGGCATCCTTGCACCTGATGTCTTGAAGGGGAGCTGTGATGAGGTTACTACTTCCAAGAGGATTCTGGAGAAGGTGGACCTTAAAGGGTATCAGATTGGTAAAACAAAAGTGTTTCTTAGAGCTGGTCAGATGGCAGAACTAGATGCTCGTAGGAATGAGGTTTTAGGAAGATCTGCTAGCATTATCCAGAGAAAAGTTCGTTCATATCTAAGTCGTAAAAGCTTTGTCTTGTTGCGGCAATCTGCCATACAAATTCAAGCCTCATGTCGAGTTCAAGTTGCATGCCATCGTTATGAAAAAATGAGGAAGGAAGCTGCATGTCGGACGATCCAAAAAGACTTGCGCATGTATCTTGCTAGGAAAGCTTACAACAGGTTTTGCTCTTCAGCTCTTTCTATTCAAACAGGTATGCGAGCGATGGGTGCTTGTAATGAGCTTCGTTTCAGGAAGCAGACTAAAGCTGCAATTATTATCAAGAGTCGATGCCGAGGATACTTAGCCCACCTTCATTATCTGAGGATAAAGAAAGCAGCAATTTCAACACAATGTGCCTGGAGAGGAAAAGTTGCCCGTAGAGAACTACGGAAGCTTAAAATAGCTGCTAAGGAAACTGGTGCTCTCCAAGCTGCTAAAACTATGCTGGAAAAGCAAGTTGAAGAGCTGACCTGCCAACTCCAGCTGGAGAAACGCATGAGGGCTGACATTGAGGAAGCCAAAACACAGGAAAATGCAAAACTGCAGAATGCTTTGCAAGAGATGCAAGTTCAATTTCAAGAAACTAAAGAAATGCTTATCAAAGAACGTGAGAATGCAAAAAAAGCAGATGAGAAAGTACCTATCATACAAGAGGTTCCAGCTATTGATCATGAAATGATGAATAAGTTGACTGCTGAAAATGAAAAGCTCAAGGATTTGGTAAGTTCACTGGAGAAGAAGATTGATGAGACACAGAGAAAATATGAAGAAACAAACAAGATCAGTGAAGAGCGCTTGAAACAGGCTTTGGATGCAGAGTCAAAAATAATTCAGTTGAAAACTGATATGCAAAGACTTGAAGAAAAACTTTCTGACATGGAAACTGAGGACCAAATTCTGCGTCAGCAAGTATCGTTGCATTCTCCTGTTGGAAAAATGTCGGAACATTTAGCAATAGCATCTGAGCCGCACTTGGAAAATGGTCATCATGGGACTGAAGAAAAAAAGACCAGTGAGCCTGAGAGTGCAACACCTGTGAAAAAGTTTGGTACAGAGTCTGATAACAAGTTGAGGAAATCCCAGATTGAAAGGCAGCATGAGAGTGTTGATTCTCTTATCAAATGCGTGTCACAAGATCTTGGGTTTAGTAATGGAAAACCAGTTGCAGCAGTTACTATATACAAATGTCTTCTGCACTGGAAATCATTTGAAGCTGAAAAAACAAGCGTATTTGACCGTCTTATTCAGATGATTGGTTCTGCATTTGAGAACCAGGATAACAATGAACATATGGCTTATTGGCTATCCAATACATCTACACTACTATTATTGCTTCAACGGAGTCTCAGAACTACTGGTGCAGCAAGTCTACAACAGAAACCTCCCCCTGCACCATCATTATTTGGGAGGATGGCTCAAGGGTTCCGCTCATCCTTTTCTTCTGCAAATGTTTCGGTAGATGTAGTGCGTCAGGTTGAGGCTAAGTATCCAGCTTTGCTTTTCAAGCAGCAACTCACAGCATATGTGGAGACGATATATGGAATTATTCGAGACAATTTGAAGAAGGATTTGTCATCTGTCCTTTCTTCTTGTATCCAGGAACCAGAAACATCTAGAGAATCTTCTGGGCAGTCGCCGGGCAATAGTCCTCTAGCTAGTCCATGGCAGAGTATCATTAAGAGTCTAAATGAACTTCTTAGTACACTGACAGAAAATTTTGTGTCTCCAGTCCTTGTTCAGAAGATCTTCTCTCAGATATTCTCTTATATCAATTCACAGCTCTTTAATAGCCTTCTGCTTCGTCGTGAATGCTGCACATTCAGAAATGGGGAATATGTCAAGTCTGGGTTAGCTGAATTAGAACTATGGTGTGGCCAAACAAAAGAAGAGTATGTAGGCTCATCCTGGGATGAACTTAAGCACATAAGGCAAGCCGTTGGATTCTTGGTCATTCACCAAAAATCCAGAATTTCCTATGATGATTTAACAAATGACCTCTGCCCGAGCCTAAGTGTTCAACAGCTTTATAGAATATGTACACTATACTGGGATGACAACTACAACACTCGAAGTGTCTCACCAGATGTAAGTTAA 4332 0.412 MQSVPVKVVVGSHVWVEDPEIAWIDGEVVEVNGEEIKIICTSGKTIVANPSDVYPKDTEAPPHGIDDMTKLAYLHEPGVLQNLRCRYDINEIYTYTGSILIAVNPFQRLPHLYDNHVMEQYKGAVFGELSPHPFAVADSAYRLMINDGVSQSILVSGESGAGKTESTKMLMQYLAYMGGRAAAEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQRGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEDVEKYKLGDPRTFHYLNQSNCYELDGVNDSKEYLATRRAMNVVGISSVEQDAIFRVVAAVLHLGNIEFAKGQEIDSSEPKDDKSRFHLRMAAELFMCDEKSLEDSLCKRVIVTRDETITKWLDPDSAAVSRDALAKIVYSRLFDWIVDKINNSIGQDPDSKVLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIDYVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFSQKLYQTFKSHKRFSKPKLSPTDFTIYHYAGDVTYQTEHFLDKNKDYVVAEHQSLLSASRCSFVADLFPPLPEESSKTSKFSSIGSRFKQQLQSLLETLSATEPHYVRCVKPNNLLKPSIFENNNVLQQLRCGGVLEAIRISCAGFPTRRTFVEFIARFGILAPDVLKGSCDEVTTSKRILEKVDLKGYQIGKTKVFLRAGQMAELDARRNEVLGRSASIIQRKVRSYLSRKSFVLLRQSAIQIQASCRVQVACHRYEKMRKEAACRTIQKDLRMYLARKAYNRFCSSALSIQTGMRAMGACNELRFRKQTKAAIIIKSRCRGYLAHLHYLRIKKAAISTQCAWRGKVARRELRKLKIAAKETGALQAAKTMLEKQVEELTCQLQLEKRMRADIEEAKTQENAKLQNALQEMQVQFQETKEMLIKERENAKKADEKVPIIQEVPAIDHEMMNKLTAENEKLKDLVSSLEKKIDETQRKYEETNKISEERLKQALDAESKIIQLKTDMQRLEEKLSDMETEDQILRQQVSLHSPVGKMSEHLAIASEPHLENGHHGTEEKKTSEPESATPVKKFGTESDNKLRKSQIERQHESVDSLIKCVSQDLGFSNGKPVAAVTIYKCLLHWKSFEAEKTSVFDRLIQMIGSAFENQDNNEHMAYWLSNTSTLLLLLQRSLRTTGAASLQQKPPPAPSLFGRMAQGFRSSFSSANVSVDVVRQVEAKYPALLFKQQLTAYVETIYGIIRDNLKKDLSSVLSSCIQEPETSRESSGQSPGNSPLASPWQSIIKSLNELLSTLTENFVSPVLVQKIFSQIFSYINSQLFNSLLLRRECCTFRNGEYVKSGLAELELWCGQTKEEYVGSSWDELKHIRQAVGFLVIHQKSRISYDDLTNDLCPSLSVQQLYRICTLYWDDNYNTRSVSPDVS* 1444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0939 1443 ProSiteProfiles IQ motif profile. 759 787 IPR000048 GO:0005515
Vvi5g0939 1443 Gene3D Myosin VI head, motor domain, U50 subdomain 313 602 - -
Vvi5g0939 1443 ProSiteProfiles Myosin motor domain profile. 63 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi5g0939 1443 SMART MYSc_2a 57 734 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi5g0939 1443 MobiDBLite consensus disorder prediction 1069 1101 - -
Vvi5g0939 1443 Coils Coil 973 1049 - -
Vvi5g0939 1443 Gene3D Kinesin motor domain 66 663 IPR036961 -
Vvi5g0939 1443 ProSiteProfiles Dilute domain profile. 1158 1443 IPR002710 -
Vvi5g0939 1443 FunFam Myosin 2 313 427 - -
Vvi5g0939 1443 PRINTS Myosin heavy chain signature 93 112 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi5g0939 1443 PRINTS Myosin heavy chain signature 150 175 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi5g0939 1443 PRINTS Myosin heavy chain signature 483 511 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi5g0939 1443 PRINTS Myosin heavy chain signature 197 224 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi5g0939 1443 PRINTS Myosin heavy chain signature 430 458 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vvi5g0939 1443 MobiDBLite consensus disorder prediction 1069 1088 - -
Vvi5g0939 1443 Gene3D - 667 734 - -
Vvi5g0939 1443 ProSiteProfiles IQ motif profile. 855 884 IPR000048 GO:0005515
Vvi5g0939 1443 ProSiteProfiles IQ motif profile. 738 765 IPR000048 GO:0005515
Vvi5g0939 1443 CDD MYSc_Myo11 77 721 IPR036018 -
Vvi5g0939 1443 Gene3D - 736 785 - -
Vvi5g0939 1443 Gene3D - 834 883 - -
Vvi5g0939 1443 Gene3D - 786 833 - -
Vvi5g0939 1443 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 9 58 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vvi5g0939 1443 Pfam DIL domain 1328 1431 IPR002710 -
Vvi5g0939 1443 Pfam Myosin N-terminal SH3-like domain 11 53 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vvi5g0939 1443 ProSiteProfiles IQ motif profile. 832 861 IPR000048 GO:0005515
Vvi5g0939 1443 CDD MyosinXI_CBD 1109 1442 IPR037975 GO:0007015
Vvi5g0939 1443 FunFam Myosin heavy chain 253 308 - -
Vvi5g0939 1443 Gene3D - 253 311 - -
Vvi5g0939 1443 SMART iq_5 783 805 IPR000048 GO:0005515
Vvi5g0939 1443 SMART iq_5 735 757 IPR000048 GO:0005515
Vvi5g0939 1443 SMART iq_5 831 853 IPR000048 GO:0005515
Vvi5g0939 1443 SMART iq_5 854 876 IPR000048 GO:0005515
Vvi5g0939 1443 SMART iq_5 758 780 IPR000048 GO:0005515
Vvi5g0939 1443 FunFam unconventional myosin-Va 834 882 - -
Vvi5g0939 1443 FunFam Class V myosin 440 586 - -
Vvi5g0939 1443 Pfam IQ calmodulin-binding motif 738 756 IPR000048 GO:0005515
Vvi5g0939 1443 Pfam IQ calmodulin-binding motif 787 804 IPR000048 GO:0005515
Vvi5g0939 1443 Pfam IQ calmodulin-binding motif 833 852 IPR000048 GO:0005515
Vvi5g0939 1443 Pfam IQ calmodulin-binding motif 857 876 IPR000048 GO:0005515
Vvi5g0939 1443 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 789 884 IPR027417 -
Vvi5g0939 1443 PANTHER MYOSIN 55 1440 - -
Vvi5g0939 1443 SMART DIL_2 1327 1434 IPR002710 -
Vvi5g0939 1443 ProSiteProfiles IQ motif profile. 784 813 IPR000048 GO:0005515
Vvi5g0939 1443 Gene3D - 440 624 - -
Vvi5g0939 1443 Coils Coil 892 958 - -
Vvi5g0939 1443 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 786 IPR027417 -
Vvi5g0939 1443 Pfam Myosin head (motor domain) 66 721 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0939 Vvi-Chr5 10177414 10288188 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0939 10 1442 Myosins gene family AT5G43900 73.061 0.0 2190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0939 K10357 - vvi:100259730 2825.04