Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0935 ATGGCGGCCAAAACCCCTAACGCAAGAAGAAAACGAACAGCAGTGAATCCAGACCTCGAACGGCTCGAGTCGCTCCCATGGAACCCATCTCTTCCCGACGTTGATGACCCCTTCTCGCTTTTCGTCGGATCCGACGAGCTCGAAGGAGGTTTTCTGTCTCTGGAGGAGATTGATGAATCCGAGTACGGTCTGGAAATTCATGAACCCGGACCAGAAGATAAAAAGGGGAATCCTAAGCAATCCAAGAAATCAAAGAAGCGAAAAAGTAGTGGTGACAATGATAGTTCCGGAGGTGGGGTTGAAGATGGAACTGAAGAAGAAGTGGTTGACAAGAAGAATTTTAAGAAGAAGAAGAAGAAGAAGAAGAAGGTAACAAAGAAAAACCAGACAAATGAAGAATCTGCAACTGTTAGCAATGACAAGGATGATGTGGAAGGGGACTCTGTTGATGAAGCTGAGTTTTATGAGTGGAATGAATTAAGACTCCATCCATTGCTCATGAAATCCATACACAGGCTTGGGTTCAAGCAACCCACACCGATACAGAAAGCTTGTATTCCTGCTGCTGCTCATCAGGGAAAGGATGTTGTTGGTGCCTCGGAGACAGGATCAGGTAAAACTCTTGCTCTTGGTTTGCCCATTTTGCAACGTCTCCTTGAAGAACGAGAAAAAGCTGCCGAGCCCCTTGCAGAAAATAGTGAGGAAAAGTATGCTGAAGGAGGCATTTTGCGGGCTCTGATTATTACTCCTACAAGAGAGCTTGCACTTCAGGTTACTGATCATCTAAAGGAAGTGGCCAAGGGTACCAATGTTAGGGTGGTCCCAATTGTTGGTGGGATGTCAACCGAAAAACAGGAGAGGCTTTTAAAAGCAAGGCCTGAGATTGTTGTTGGAACTCCGGGAAGGCTATGGGAACTAATGTCAAGAGGAGAAGACCATCTTGTTGAGTTACATTCATTGTCTTTCTTTGTATTGGATGAGGCTGATAGAATGGTAGAAAATGGCCATTTTCATGAGTTGCAGTCAATAATTGACATACTTCCAAAGACCAGTGGTTCTATGGAAAGCCTCTCCCAAAATACAGAGAATTGTTTCACAGTTTCAAACATCCAAAGAAAGAAAAGGCAAACATTTGTGTTTTCTGCAACTATTGCACTCTCTGCTGATTTTCGTAAGAAGCTGAAGCGCGGAGCCCTGAGATCGAAGCAACTGATGAATGATGGGTTGAATTCTATAGAAACTCTCTCTGAGCGAGCAGGGATGAGACCTAATGCTGCCATTGTTGATCTGACAAATGCATCAATTATGGCAAATAAACTTGAGGAGTCATTTATTGAATGTAGAGAAGAAGATAAAGATGCCTATTTATATTATATTCTGAGTGTCCATGGACAAGGTCGGACCATTGTTTTCTGTACATCTATTGCAGCTTTACGCCATACTTCTTCCCTATTGCGCATTCTTGGAATCAATGTTTGGACCCTTCATGCCCAGATGCAGCAGCGAGCACGTTTGAAGGCAATTGATCGTTTTCGTGGAAATGAACATGGTATACTTGTTGCTACTGATGTTGCAGCCCGAGGCCTTGATATCCCTGGTGTTCGAACTGTTGTTCATTATCAGCTTCCACATTCAGCAGAAGTTTATGTCCATAGAAGTGGAAGAACTGCTAGAGCTTCTGCTGATGGATGCAGCATCGCACTAATCTCACCAAATGATAGATCAAAATTTGCTAATTTGTGCAAATCATTTTCAAAGGAAAGTTTTCAGCGATTTCCTATAGAGAGCTCATACATGCCAGAGGTTGTAAAACGTTTATCTCTTGCACGTCAAATTGACAAGATTTCGCGGAAGGACTCCCAAGAAAAGGCAAAGAAAAGCTGGTTTGAACAAAATGCAGAAGCATTGGAATTGATTGTGGATGAATCTGATAGTGAGGAGGAAAAGGTGAAAATCCATAAGCAAAAGAAAGCCAGCTCCATGCATTTGAATAAGTTGCAACAGGAGCTCAATATGTTGCTCTCACATCCATTGCAACCAAAAACATTTTCGCATCGCTTTTTAGCAGGGGCTGGTGTTTCACCTCTCCTGCAACGTCAGTTTGAAGAACTATCTAAGCAGAAGCTAGATGATGGAAGGAGTTTGGGAGAAAGCAAGAGAAGGAAATTGCTTGTTATTGGTCAGGAATGTGTGGAACCTCTCCAGGCACTTAGGAGTGCTGGTCAGGAGGTGTGCATGGATGTGAAAGAGACTGCAGAAAAACGAAGAAGTTTGGAGAGTTTAAGGAGGAAAAGAAAAGAGGAGAAAAAACAGTTACGTGATCAACGAAGAAAGCAGAGGAAAAGACTAAAGGCAGATGTTGAGTGA 2367 0.4301 MAAKTPNARRKRTAVNPDLERLESLPWNPSLPDVDDPFSLFVGSDELEGGFLSLEEIDESEYGLEIHEPGPEDKKGNPKQSKKSKKRKSSGDNDSSGGGVEDGTEEEVVDKKNFKKKKKKKKKVTKKNQTNEESATVSNDKDDVEGDSVDEAEFYEWNELRLHPLLMKSIHRLGFKQPTPIQKACIPAAAHQGKDVVGASETGSGKTLALGLPILQRLLEEREKAAEPLAENSEEKYAEGGILRALIITPTRELALQVTDHLKEVAKGTNVRVVPIVGGMSTEKQERLLKARPEIVVGTPGRLWELMSRGEDHLVELHSLSFFVLDEADRMVENGHFHELQSIIDILPKTSGSMESLSQNTENCFTVSNIQRKKRQTFVFSATIALSADFRKKLKRGALRSKQLMNDGLNSIETLSERAGMRPNAAIVDLTNASIMANKLEESFIECREEDKDAYLYYILSVHGQGRTIVFCTSIAALRHTSSLLRILGINVWTLHAQMQQRARLKAIDRFRGNEHGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASADGCSIALISPNDRSKFANLCKSFSKESFQRFPIESSYMPEVVKRLSLARQIDKISRKDSQEKAKKSWFEQNAEALELIVDESDSEEEKVKIHKQKKASSMHLNKLQQELNMLLSHPLQPKTFSHRFLAGAGVSPLLQRQFEELSKQKLDDGRSLGESKRRKLLVIGQECVEPLQALRSAGQEVCMDVKETAEKRRSLESLRRKRKEEKKQLRDQRRKQRKRLKADVE* 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0935 788 MobiDBLite consensus disorder prediction 756 774 - -
Vvi5g0935 788 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 324 332 IPR000629 -
Vvi5g0935 788 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 155 183 IPR014014 GO:0003724
Vvi5g0935 788 CDD SF2_C_DEAD 440 569 - -
Vvi5g0935 788 MobiDBLite consensus disorder prediction 756 788 - -
Vvi5g0935 788 Pfam Helicase conserved C-terminal domain 451 559 IPR001650 -
Vvi5g0935 788 CDD DEADc_DDX24 166 429 - -
Vvi5g0935 788 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 187 402 IPR014001 -
Vvi5g0935 788 Gene3D - 431 674 IPR027417 -
Vvi5g0935 788 SMART ultradead3 174 412 IPR014001 -
Vvi5g0935 788 Gene3D - 110 403 IPR027417 -
Vvi5g0935 788 MobiDBLite consensus disorder prediction 63 79 - -
Vvi5g0935 788 Coils Coil 751 788 - -
Vvi5g0935 788 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 439 600 IPR001650 -
Vvi5g0935 788 SMART helicmild6 479 560 IPR001650 -
Vvi5g0935 788 PANTHER RNA HELICASE 118 728 - -
Vvi5g0935 788 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 244 577 IPR027417 -
Vvi5g0935 788 MobiDBLite consensus disorder prediction 1 146 - -
Vvi5g0935 788 Pfam DEAD/DEAH box helicase 179 385 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0935 Vvi-Chr5 10088588 10130017 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0935 157 600 Eukaryotic Initiation Factors Gene Family AT5G11200 27.719 1.48e-36 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0935 K14805 - vvi:100261404 1413.28