Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0929 ATGGCTATAGCTAATGGACGTCTTAATGTTGTGGAATTTCTTATCAGTAATGGAGTGAGTCTTAATGCTTCTAATATAGAGAAGTATACTCTTTGGATTCTACAGTTAAGGGACTTTCATATGGAGATTATCATTCATGCCACTCAGACTCAGAATGTTCTCGGTAAAAAAGGAAGAAAGATTAGGGAGCTGACTTCAGTGGTTCAGAAGAGGTTTGAATTTCTTGAAAACAACGTGGAGCTTTATGCTGAGAAGTTTAACAATAGGGTCTTCTATGCCATTGCTCAGGCAGAGTCACTACGATTCAAGCTTCTTGGAGGACTTGTTGTTCGGAGGGCTGGCTATGGTGTTCTGAGTTTTGTTATGGAAAGTGGGACAAAAGGATGTGAGGTTATTGGTGGGAAGCTCCATGTTTAG 417 0.4029 MAIANGRLNVVEFLISNGVSLNASNIEKYTLWILQLRDFHMEIIIHATQTQNVLGKKGRKIRELTSVVQKRFEFLENNVELYAEKFNNRVFYAIAQAESLRFKLLGGLVVRRAGYGVLSFVMESGTKGCEVIGGKLHV* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0929 138 Gene3D - 24 86 IPR015946 -
Vvi5g0929 138 Gene3D - 89 138 IPR036419 -
Vvi5g0929 138 ProSiteProfiles Ankyrin repeat profile. 1 26 IPR002110 GO:0005515
Vvi5g0929 138 Pfam KH domain 39 88 IPR004044 GO:0003723
Vvi5g0929 138 SUPERFAMILY Ribosomal protein S3 C-terminal domain 88 132 IPR036419 -
Vvi5g0929 138 FunFam Uncharacterized protein 24 86 - -
Vvi5g0929 138 FunFam 40S ribosomal protein S3-1 89 138 - -
Vvi5g0929 138 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 38 93 IPR009019 GO:0003723
Vvi5g0929 138 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 25 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0929 Vvi-Chr5 9952898 9953314 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0929 34 137 Cytoplasmic Ribosomal Protein Gene Family AT2G31610 71.429 1.92e-46 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0929 K02985 - pda:103712746 146.362