Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0928 ATGGCTACAACTAATGGACGTCTTGATGATGTGGAATTTCTTATCAGTCGTGGAGTGGATCTTAGTGCTTCTAATATGGAGAAGTACACTATTTGGGTTCTACAGTTGAGGGACTTTTGCACGGAGATTATCATTCATGCCACTCAGACTCAAAATGTTCTCTGTAAAAAAGGAAAAAAGATCAGGGAGCTGACTTCAGTGGTTCAGAAGAGGTTTGTTATGGAAAGTGGGACGAAAGGATGTGAGGTTATTATGAGTGGAAAACTCTGTGTTCAGTGTGCCAAGTCAATAAAGTTTAAGGATGGGTACCTAATCTTCTCTGGTCAACTTGTTAAGGATTACATTGACTCAACTGTGAGACATGTTCTCCTCAAACAGGGCATCCTTAGTATCAAGTCTTCTTTACTCAGCCTAGGGATGTTTATTCACATTACTGGTCACCGTTTCAATGATTTTTGCCGAGATGAACCTCCAGAGGAGCACAACCTTCTAGTTTTGGCTATCCCACTGTTCATGACTCTTCCATAG 528 0.411 MATTNGRLDDVEFLISRGVDLSASNMEKYTIWVLQLRDFCTEIIIHATQTQNVLCKKGKKIRELTSVVQKRFVMESGTKGCEVIMSGKLCVQCAKSIKFKDGYLIFSGQLVKDYIDSTVRHVLLKQGILSIKSSLLSLGMFIHITGHRFNDFCRDEPPEEHNLLVLAIPLFMTLP* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0928 175 SUPERFAMILY Ribosomal protein S3 C-terminal domain 69 132 IPR036419 -
Vvi5g0928 175 ProSitePatterns Ribosomal protein S3 signature. 94 130 IPR018280 -
Vvi5g0928 175 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 71 135 - -
Vvi5g0928 175 Gene3D - 39 139 IPR036419 -
Vvi5g0928 175 Pfam Ribosomal protein S3, C-terminal domain 62 132 IPR001351 GO:0003735|GO:0006412
Vvi5g0928 175 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 39 75 IPR009019 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0928 Vvi-Chr5 9938523 9948127 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0928 41 136 Cytoplasmic Ribosomal Protein Gene Family AT2G31610 46.528 2.40e-34 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0928 K02985 - vvi:100259512 108.997