Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0927 ATGTCTTGGGGAATGATGGCAGGGCACTTGGGTTGGGGGATCATAGAAGAAGGGTGGAGGAAGGGCCCTTGGACTGCTGAAGAGGACAGATTGCTCACTGAGTATGTTAAATTGCATGGTGAAGGAAGATGGAATTCTGTGGCTAGACTTGCAGGACTGAGAAGGAATGGGAAGAGCTGCAGACTGAGGTGGGTGAATTACTTGAGGCCAGACCTCAAGCGGGGGCAGATAACCCCACATGAAGAGAACATAATTCTAGAGCTGCATGCTAGGTGGGGGAACAGATGGTCGACCATTGCTAGAAGCTTGCCCGGAAGAACAGACAATGAAATCAAGAACTACTGGAGGACCCATTTCAAGAAGAAGGGAAAACTCCCTTCCGACAAGTCTGAGAAGGCGAAAACCCGCCTCCTAAGAAAGCAACAATTTTATCAGCAGCAGCAGCAACAGCAACAGCAACAGCAGCAGCAGCAACAACAACAACTGAATCAACTGGACCTGAAAAGGATCATGGCTTTACTCGACCAACCCGACATTGGAGACACACCAATGGCCCAAGCGAGGCAAGACTTGGGCAGTTGTATTTACAGTACACATCATGCAGCTGAAGAGCATGGCTATGTGCATCTTCCCATCCCCAACGCAGATGTGTCTACCCAAGAATCCTCAAGTGAGGACATGCTGTGGGATGGTCTGTGGAACTTGGATGATTTCCATGGCAATCTGAGTGCAGCCTGTGCAGCAAGCAAAGCTAGTTTGCACCATCTGGTTGCTCCCTTTTACTGA 786 0.4949 MSWGMMAGHLGWGIIEEGWRKGPWTAEEDRLLTEYVKLHGEGRWNSVARLAGLRRNGKSCRLRWVNYLRPDLKRGQITPHEENIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKGKLPSDKSEKAKTRLLRKQQFYQQQQQQQQQQQQQQQQQLNQLDLKRIMALLDQPDIGDTPMAQARQDLGSCIYSTHHAAEEHGYVHLPIPNADVSTQESSSEDMLWDGLWNLDDFHGNLSAACAASKASLHHLVAPFY* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0927 261 CDD SANT 78 119 IPR001005 -
Vvi5g0927 261 Pfam Myb-like DNA-binding domain 74 118 IPR001005 -
Vvi5g0927 261 Pfam Myb-like DNA-binding domain 21 68 IPR001005 -
Vvi5g0927 261 CDD SANT 23 68 IPR001005 -
Vvi5g0927 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 72 IPR017930 -
Vvi5g0927 261 SUPERFAMILY Homeodomain-like 18 115 IPR009057 -
Vvi5g0927 261 ProSiteProfiles Myb-like domain profile. 16 68 IPR001005 -
Vvi5g0927 261 FunFam Myb transcription factor 21 73 - -
Vvi5g0927 261 Gene3D - 21 73 - -
Vvi5g0927 261 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 18 189 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vvi5g0927 261 SMART sant 20 70 IPR001005 -
Vvi5g0927 261 SMART sant 73 121 IPR001005 -
Vvi5g0927 261 FunFam MYB-related transcription factor 78 122 - -
Vvi5g0927 261 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Vvi5g0927 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 123 IPR017930 -
Vvi5g0927 261 Coils Coil 144 168 - -
Vvi5g0927 261 Gene3D - 78 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0927 Vvi-Chr5 9921422 9922390 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0927 15 260 MYB Transcription Factor Family AT3G24310 59.302 1.10e-91 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi5g0927 Myb_DNA-binding 4.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0927 K09422 - vvi:100263072 506.138