Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0924 ATGGGTTCTCTCATCCCATTCCAAGACCTCAATCTTCTTCCTGACCCAGCCACCTCCCCCTCCACCGCTGCCACTGCCATTACTCCCGCCCTCATTTTCCCCAAAATCGAGCCCAAGCTCGAACCCTTTGATGCTCCAACTCTACCGCTACAGTCTTTTCCCCAGAACCCTAGCCCTAATTTCTTTGTAAACTCCGGACAACTGCCGTTTGTTGGACCCGGTTCGAACCCTAATGATACAGTTTTTTCTCAGACTCCCGAGGGTTCTCCAGAAGAGAACAATGTTTACTCTGAATACTACCGGATTTCTGAGTTATTCAGGACGGCTTTCTCCAAGAGGATGGAGAACTTAGGGAATATCGAAGTCTTGGATCCGGATTCACGGGCAATTGTGCCGGTGCCGGAGGAAACTAGGATTTCCAACGTGGTTGTATCGCGTCGCCGGGACCAGCGGTCGTCGGAGCTGGTGAGAGTTACGGATCTTACAATTGATCACGTGAGGTACTTCCGCGACCTCGTGAGACGAACGAGAATGTTATACGACGCGCTCCGAATCTTCTCAATGATGGAGGAGGAGAAACGCCGAGAAGTGGGCCTTATTACCAGGCGCAGCAGAGGGGATTTGAGAGCGGCGAAGTTGATGAAAGACCGAGGCTTGTGGCTGAATCGCGATAAGCGGATCGTTGGGTCGATTCCGGGGATTAACATTGGAGATTTGTTTCTTTTCAGAATGGAATTGTGTGTGGTTGGATTGCATGGTCAAGCTCAAGCCGGAATTGACTACTTGCCGGGGAGCAGGAGCTCGAACGGGGAACCAATTGCGACCAGCATTATTGTCTCTGGTGGCTACGAAGACGACCAAGACGAGGGTGATGTGCTAATCTATACTGGTCATGGAGGGCAAGATAAATTTTCAAGGCAATGCGATCACCAGAAACTAGAAGGTGGCAATCTTGCACTGGAGCGAAGCATGCATTACGGAATTGAGGTGAGAGTCATTCGAGGAATTAAGTATGAGGGTAGCGTGACAGGTAAAGTTTACGTTTATGATGGGTTATATAAAATTCATGATTCCTGGTTTGATGTGGGCAAGTCTGGTTTTGGGGTCTATAAGTATAAGCTTCTGAGAAATGAAGGACAAGCTGAAATGGGTAGTGCCATTTTAAGGTTTGCTGAGAATCTTAGGGTTAGCCCCTTGACTGTTCGACCGGTGGGTTACCTTTGTGATGATCTTTCAACGAAGAAAGAGAATATCCCTGTTTTTCTGTTCAATGATATTGATGGTGATAATGAACCAATGTATTATGAGTATCTTCCGAGGACTGTGTTTCCGCTCCATGCTTATAATCTTGGGGGAAATGGAAGTGGGTGTGACTGCGTTGCAGGTTGTACTGATGATTGCGTTTGTGCGCAGAGAAATGGGGGTGAGTTTGCTTACGATCAAAATGGGTTTCTCTTGAGAGGGAAGCCAGTGATATTTGAATGCGGGAGCTTCTGCCGCTGCCCACCAACTTGCAGGAATCGCCTGACTCAGAAAGGATTGCGGAATAGGTTTGAAGTGTTTAGATCGAGGGAAACTGGTTGGGGAGTTAGGTCCTTAGACTTGATACAGGCTGGAGCTTTTATATGTGAGTATGCTGGGGTTGTTCTCACAAGGGAGCAGGCAGCACTGTTTAGTATGAATGGTGATACTTTGATTTATCCCAATCGATTTACTGATAGATGGGCAGAATGGGGTGACTTTTCCAAAGTGTACTCGGATTATGTACGACCGATGCATCCCTCAATTCCTCCATTAGATTTTGCAATGGATGTATCAAGAATGAGGAATCTTGCTTGTTATATGAGCCACAGTTCATGTCCTAATGTGCTTGTGCAGTTTGTGCTATATGATCACCATAATTTATTGTTCCCTCGCCTTATGCTATTTGCCATGGAAAACATCCCTCCTCTGAGAGAGCTTAGCTTAGATTATGGCGTGGCTGATGAATGGACTGGGAAGCTTCCTATCTGTAACTGA 2019 0.469 MGSLIPFQDLNLLPDPATSPSTAATAITPALIFPKIEPKLEPFDAPTLPLQSFPQNPSPNFFVNSGQLPFVGPGSNPNDTVFSQTPEGSPEENNVYSEYYRISELFRTAFSKRMENLGNIEVLDPDSRAIVPVPEETRISNVVVSRRRDQRSSELVRVTDLTIDHVRYFRDLVRRTRMLYDALRIFSMMEEEKRREVGLITRRSRGDLRAAKLMKDRGLWLNRDKRIVGSIPGINIGDLFLFRMELCVVGLHGQAQAGIDYLPGSRSSNGEPIATSIIVSGGYEDDQDEGDVLIYTGHGGQDKFSRQCDHQKLEGGNLALERSMHYGIEVRVIRGIKYEGSVTGKVYVYDGLYKIHDSWFDVGKSGFGVYKYKLLRNEGQAEMGSAILRFAENLRVSPLTVRPVGYLCDDLSTKKENIPVFLFNDIDGDNEPMYYEYLPRTVFPLHAYNLGGNGSGCDCVAGCTDDCVCAQRNGGEFAYDQNGFLLRGKPVIFECGSFCRCPPTCRNRLTQKGLRNRFEVFRSRETGWGVRSLDLIQAGAFICEYAGVVLTREQAALFSMNGDTLIYPNRFTDRWAEWGDFSKVYSDYVRPMHPSIPPLDFAMDVSRMRNLACYMSHSSCPNVLVQFVLYDHHNLLFPRLMLFAMENIPPLRELSLDYGVADEWTGKLPICN* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0924 672 SMART G9a_1 224 380 IPR003105 -
Vvi5g0924 672 ProSiteProfiles YDG domain profile. 229 376 IPR003105 -
Vvi5g0924 672 SUPERFAMILY SET domain 398 671 IPR046341 -
Vvi5g0924 672 Gene3D - 210 387 IPR036987 -
Vvi5g0924 672 ProSiteProfiles SET domain profile. 516 659 IPR001214 GO:0005515
Vvi5g0924 672 SMART preset_2 408 500 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vvi5g0924 672 SUPERFAMILY PUA domain-like 210 388 IPR015947 -
Vvi5g0924 672 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 85 672 IPR025794 GO:0016571
Vvi5g0924 672 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 210 393 - -
Vvi5g0924 672 Pfam SAD/SRA domain 228 380 IPR003105 -
Vvi5g0924 672 Gene3D SET domain 388 672 IPR046341 -
Vvi5g0924 672 Pfam SET domain 527 659 IPR001214 GO:0005515
Vvi5g0924 672 ProSiteProfiles Pre-SET domain profile. 455 513 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vvi5g0924 672 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 134 660 - -
Vvi5g0924 672 Pfam Pre-SET motif 412 508 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vvi5g0924 672 SMART set_7 516 665 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0924 Vvi-Chr5 9819374 9821392 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0924 170 661 Su(var)3-9 homologs AT5G04940 39.412 6.86e-110 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vvi5g0924 SAD_SRA 3.1e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0924 K11420 - vvi:100261297 1363.21