Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0901 ATGGATAGTGGTCTGAGTTCATTAGGTGGTGGTAGTGGTGGTGGTGGTTGTGGTGGTGGTTCCTCTACTAACGAATCTGTAACTACGGTGTCAAAGGTGGAGGTGGTGGAGCAGATGTCAACCGAGGCCTCTTCTTATCCGGGGGAGGCTGAGCTGGAACTGGGTCTGGGTCTCAGCCTTGGGACTGGTGGTGGTGGTGGTGGTGGGTTGGTGAAGCCCAAGCAGCCCTCTTCTGCATGGGGTGAGTATGGCAGAATCCTGACGGCCAAGGACTTCCCTTCTGTGCTTTCCAATGCTTCTTCCACTGCTCCTCGCTTCTCTAATTCTTCCGCTGGTCCTGTTTCTGGGACTAAGAGAGCTGCCGACTCTGCTGTTTCTCAAGAGGTTGGATCTGCTACTGCTGCCAGTCAGGTTGTGGGATGGCCTCCAATCAGAGCTTATAGAATGAACAGCTTGGTTAACCAAGCAAAAGCCCTAGCTGCTGAAGATGACAAGGCTGACAGCGAGAATGATAAATTTAAGGATACTTTGAAGAAGAAACCTTACACTGGTAGCAACAAGAACAATTCTACTGTGAAAGAAAAAGGGCATCTTGGGTTTGTTAAGGTGAATATGGACGGATTGCCTATTGGGAGGAAGGTGGATTTGGATGCTCATGCCTGCTACGGGACACTGGCTCAAACATTGGAGGACATGTTCTTTAGGCACAACACAACCATGCCTCCCATTCGGTCTGATGTAGAGAAGGGACAATCAACAAACCCCTCCAAGCTTTTGGATGGATCGTCTGAGTTTGTGCTCACTTATGAAGATAAGGAGGGAGACTGGATGCTTGTGGGAGATGTTCCTTGGGGGATGTTCCTCAGCACTGTGAAAAGGCTTCGAATTATGAGGACCTCTGAGGCTAATGGGCTTGCTCCAAGATTCCAAGAAAGGAGTGAGAGACAGAGAAGCAAGCCCATTTGA 966 0.4969 MDSGLSSLGGGSGGGGCGGGSSTNESVTTVSKVEVVEQMSTEASSYPGEAELELGLGLSLGTGGGGGGGLVKPKQPSSAWGEYGRILTAKDFPSVLSNASSTAPRFSNSSAGPVSGTKRAADSAVSQEVGSATAASQVVGWPPIRAYRMNSLVNQAKALAAEDDKADSENDKFKDTLKKKPYTGSNKNNSTVKEKGHLGFVKVNMDGLPIGRKVDLDAHACYGTLAQTLEDMFFRHNTTMPPIRSDVEKGQSTNPSKLLDGSSEFVLTYEDKEGDWMLVGDVPWGMFLSTVKRLRIMRTSEANGLAPRFQERSERQRSKPI* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0901 321 Gene3D - 193 310 - -
Vvi5g0901 321 MobiDBLite consensus disorder prediction 165 190 - -
Vvi5g0901 321 FunFam Auxin-responsive protein 193 309 - -
Vvi5g0901 321 ProSiteProfiles PB1 domain profile. 198 301 IPR000270 GO:0005515
Vvi5g0901 321 MobiDBLite consensus disorder prediction 165 181 - -
Vvi5g0901 321 MobiDBLite consensus disorder prediction 1 30 - -
Vvi5g0901 321 Pfam AUX/IAA family 115 308 IPR033389 -
Vvi5g0901 321 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 51 304 IPR003311 GO:0005634|GO:0006355
Vvi5g0901 321 MobiDBLite consensus disorder prediction 97 119 - -
Vvi5g0901 321 SUPERFAMILY CAD & PB1 domains 199 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0901 Vvi-Chr5 9458989 9461269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0901 153 312 B3 DNA Binding Superfamily AT4G23980 30.625 3.73e-13 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vvi5g0901 AUX_IAA 1.3e-61 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0901 K14484 - vvi:100256286 545.043