Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0897 ATGGCTGCCACCGCCGCCGCCGCCATCGGATCTTCTTTCTCCACTACCATGCACACCCTCAAGCTCTCCCGGTCCAAACACTGCCCATCCGATGCTCTCCTCAGAATCATTTCAACCCCCATATTTAAAGTACCATCAATCTCTCACTCTCACGTGATCGACCCTCCTTTGTCTCTGCCCATCTCGCACAAGTGGAGGGCCCCCAGAATATCCGCTGCTGTTGCACAGGAAGAGGCGGCAGCCACGGCTCCGGTGGAGGAGGAGCAGCAGCAGGGGCAGGAGGAAGGAGAGCAAGTGTTGAGAGAAGAAGGAGCCGAGTCTCCTGTCAATACTAAGCTCTATTTTGGGAACTTGCCTTATAGCTGTGACAGTGCCCAATTGGCTGGAATTATTCAAAACTATGGCAGTCCAGAACTGGTTGAGGTTCTTTATAATAGGGATACTGGAAGAAGCAGAGGATTCGCATTTGTGACAATGAGTAGTGTCGAAGATTGTAATGCAGTCATTGAAAATCTTGATGGAAGTGAATATGGTGGTCGAACCTTGAGGGTGAATTTTTCAGACAAGCCTAAACCTAAACTTCCATTATATCCAGAAACTGAATACAAGCTTTTTGTTGGAAATTTATCCTGGTCAGTCACATCTGAAAGCCTAAACCAAGTTTTTCAAGAATATGGCAATGTGATTGGAGCAAGGGTTTTGTATGATGGAGAGACAGGAAGGTCCCGTGGCTACGGTTTTGTATGCTATTCAACGAAAGCTGAGATGGATACTGCCCTTGAATCTCTTAACGGAGTGGAACTAGAAGGACGGGCAATTCGTATTAGTTTAGCTCAAGGAAGACGATCATGA 852 0.4718 MAATAAAAIGSSFSTTMHTLKLSRSKHCPSDALLRIISTPIFKVPSISHSHVIDPPLSLPISHKWRAPRISAAVAQEEAAATAPVEEEQQQGQEEGEQVLREEGAESPVNTKLYFGNLPYSCDSAQLAGIIQNYGSPELVEVLYNRDTGRSRGFAFVTMSSVEDCNAVIENLDGSEYGGRTLRVNFSDKPKPKLPLYPETEYKLFVGNLSWSVTSESLNQVFQEYGNVIGARVLYDGETGRSRGYGFVCYSTKAEMDTALESLNGVELEGRAIRISLAQGRRS* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0897 283 SMART rrm1_1 203 276 IPR000504 GO:0003723
Vvi5g0897 283 SMART rrm1_1 112 185 IPR000504 GO:0003723
Vvi5g0897 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 183 IPR000504 GO:0003723
Vvi5g0897 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 274 IPR000504 GO:0003723
Vvi5g0897 283 Gene3D - 189 283 IPR012677 -
Vvi5g0897 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Vvi5g0897 283 SUPERFAMILY RNA-binding domain, RBD 104 194 IPR035979 GO:0003676
Vvi5g0897 283 FunFam 28 kDa ribonucleoprotein, chloroplastic 193 283 - -
Vvi5g0897 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 280 IPR000504 GO:0003723
Vvi5g0897 283 CDD RRM2_NsCP33_like 203 278 - -
Vvi5g0897 283 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 68 192 - -
Vvi5g0897 283 PANTHER OS02G0815200 PROTEIN 55 281 - -
Vvi5g0897 283 SUPERFAMILY RNA-binding domain, RBD 195 282 IPR035979 GO:0003676
Vvi5g0897 283 Gene3D - 64 186 IPR012677 -
Vvi5g0897 283 MobiDBLite consensus disorder prediction 78 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0897 Vvi-Chr5 9396247 9399677 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0897 111 279 Eukaryotic Initiation Factors Gene Family AT3G16380 32.796 7.38e-19 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0897 - - vvi:104879303 515.768