Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi5g0897 | ATGGCTGCCACCGCCGCCGCCGCCATCGGATCTTCTTTCTCCACTACCATGCACACCCTCAAGCTCTCCCGGTCCAAACACTGCCCATCCGATGCTCTCCTCAGAATCATTTCAACCCCCATATTTAAAGTACCATCAATCTCTCACTCTCACGTGATCGACCCTCCTTTGTCTCTGCCCATCTCGCACAAGTGGAGGGCCCCCAGAATATCCGCTGCTGTTGCACAGGAAGAGGCGGCAGCCACGGCTCCGGTGGAGGAGGAGCAGCAGCAGGGGCAGGAGGAAGGAGAGCAAGTGTTGAGAGAAGAAGGAGCCGAGTCTCCTGTCAATACTAAGCTCTATTTTGGGAACTTGCCTTATAGCTGTGACAGTGCCCAATTGGCTGGAATTATTCAAAACTATGGCAGTCCAGAACTGGTTGAGGTTCTTTATAATAGGGATACTGGAAGAAGCAGAGGATTCGCATTTGTGACAATGAGTAGTGTCGAAGATTGTAATGCAGTCATTGAAAATCTTGATGGAAGTGAATATGGTGGTCGAACCTTGAGGGTGAATTTTTCAGACAAGCCTAAACCTAAACTTCCATTATATCCAGAAACTGAATACAAGCTTTTTGTTGGAAATTTATCCTGGTCAGTCACATCTGAAAGCCTAAACCAAGTTTTTCAAGAATATGGCAATGTGATTGGAGCAAGGGTTTTGTATGATGGAGAGACAGGAAGGTCCCGTGGCTACGGTTTTGTATGCTATTCAACGAAAGCTGAGATGGATACTGCCCTTGAATCTCTTAACGGAGTGGAACTAGAAGGACGGGCAATTCGTATTAGTTTAGCTCAAGGAAGACGATCATGA | 852 | 0.4718 | MAATAAAAIGSSFSTTMHTLKLSRSKHCPSDALLRIISTPIFKVPSISHSHVIDPPLSLPISHKWRAPRISAAVAQEEAAATAPVEEEQQQGQEEGEQVLREEGAESPVNTKLYFGNLPYSCDSAQLAGIIQNYGSPELVEVLYNRDTGRSRGFAFVTMSSVEDCNAVIENLDGSEYGGRTLRVNFSDKPKPKLPLYPETEYKLFVGNLSWSVTSESLNQVFQEYGNVIGARVLYDGETGRSRGYGFVCYSTKAEMDTALESLNGVELEGRAIRISLAQGRRS* | 284 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi5g0897 | 283 | SMART | rrm1_1 | 203 | 276 | IPR000504 | GO:0003723 | |
Vvi5g0897 | 283 | SMART | rrm1_1 | 112 | 185 | IPR000504 | GO:0003723 | |
Vvi5g0897 | 283 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 113 | 183 | IPR000504 | GO:0003723 | |
Vvi5g0897 | 283 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 204 | 274 | IPR000504 | GO:0003723 | |
Vvi5g0897 | 283 | Gene3D | - | 189 | 283 | IPR012677 | - | |
Vvi5g0897 | 283 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 111 | 189 | IPR000504 | GO:0003723 | |
Vvi5g0897 | 283 | SUPERFAMILY | RNA-binding domain, RBD | 104 | 194 | IPR035979 | GO:0003676 | |
Vvi5g0897 | 283 | FunFam | 28 kDa ribonucleoprotein, chloroplastic | 193 | 283 | - | - | |
Vvi5g0897 | 283 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 202 | 280 | IPR000504 | GO:0003723 | |
Vvi5g0897 | 283 | CDD | RRM2_NsCP33_like | 203 | 278 | - | - | |
Vvi5g0897 | 283 | FunFam | RNA-binding (RRM/RBD/RNP motifs) family protein | 68 | 192 | - | - | |
Vvi5g0897 | 283 | PANTHER | OS02G0815200 PROTEIN | 55 | 281 | - | - | |
Vvi5g0897 | 283 | SUPERFAMILY | RNA-binding domain, RBD | 195 | 282 | IPR035979 | GO:0003676 | |
Vvi5g0897 | 283 | Gene3D | - | 64 | 186 | IPR012677 | - | |
Vvi5g0897 | 283 | MobiDBLite | consensus disorder prediction | 78 | 103 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi5g0897 | Vvi-Chr5 | 9396247 | 9399677 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi5g0897 | 111 | 279 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 32.796 | 7.38e-19 | 84.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi5g0897 | - | - | vvi:104879303 | 515.768 |