Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0888 ATGAAGAATTGTTCTTTAGGTTTGCTTAAAGACAAGGTGATTTCAGTTGATGATATTTCCAGCCCAATAAGTGCTCAACTTTTTGAATTTTTCAACTCCGAATTATTCCCGGAAACCCTACAAAGCTCTGGAGGCACTTCCTCTTCAAATGGTTGTTGTGAAGACAACTCCTCTTATCCCACAACTCTTCCCTTGCCTCCAGAAATAAGCAAGTTCACTAGCAACCATGAAACCGCAACTCTTCCTTTGCCTTCAGACATAAACAAGTTCAATAGCAACCATGAAAATAATGCCACCACTGCCACAACCACCTCGACCACCACAACCGCTAGCAACAATAGCAATCTCTCTATAATCTTTGATTCTCAAGAGGAAATAGATAACGATATTTCTGCTTCAATAGGCTTTTCTCCATCCCCTCCATTTTCTGTTCCTCCATTTTTCAATCCCCAATCTGAGCAGTTCGATATCTCTCCTATACCACCTCAAATACAGATAACGGATACTGTTGTTGATGGGCTCTCACAGTATCCTCCTGACCCTGCTCCCGCTCTTATCGGCCCTCCATTACCATCAGTATGTGAAGAGGAGTGCTTGTCTTCCATCCCTCTTCCATACATGCGTCTCAACCCGTCATCTCCTTCGTGCTCTTTCATCGAGCCGGCCACCATGGGATCTTACCTGCTGGGGAATTTTACCGCTGCATTATCTGCAGACAGTTGTGGTATTTTCTCTGGGGGTGTTCTTATGGCTCCTGAATTGCAAGCACAAGAATTGGAGTACCAAGGCGATAACGGTGGAATTTATTGTCAAGACTCGATGCAGCGGGTTTTCAACTCTTCAGAGCTACAGGCACTTAGTAATGAGAACCAGCAGCTGGTGGGTGGAGGTGGGACTACTACTCCTTTAGCATCAGAGATGTCAAGTTTGGAAGAATCCACTTTCAAGGTTGGAAAACTCTCTGTGGAGCAAAGGAAAGAGAAGATCCATAGATACATGAAGAAAAGGAACGAGAGGAATTTCAGCAAGAAAATCAAGACACTGGCAGACAGCAGACCACGAGTTAGAGGAAGATTTGCCAAAAATGATGACTTTGGAGAGGCCCCTAGAGCCAGTGGTGGACACCATGATGAGGATGACGAGGAAGATGTAAGATCTGATCTATTACCTGTATGA 1176 0.4447 MKNCSLGLLKDKVISVDDISSPISAQLFEFFNSELFPETLQSSGGTSSSNGCCEDNSSYPTTLPLPPEISKFTSNHETATLPLPSDINKFNSNHENNATTATTTSTTTTASNNSNLSIIFDSQEEIDNDISASIGFSPSPPFSVPPFFNPQSEQFDISPIPPQIQITDTVVDGLSQYPPDPAPALIGPPLPSVCEEECLSSIPLPYMRLNPSSPSCSFIEPATMGSYLLGNFTAALSADSCGIFSGGVLMAPELQAQELEYQGDNGGIYCQDSMQRVFNSSELQALSNENQQLVGGGGTTTPLASEMSSLEESTFKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKTLADSRPRVRGRFAKNDDFGEAPRASGGHHDEDDEEDVRSDLLPV* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0888 391 MobiDBLite consensus disorder prediction 350 391 - -
Vvi5g0888 391 Pfam CCT motif 325 362 IPR010402 GO:0005515
Vvi5g0888 391 ProSiteProfiles CCT domain profile. 325 362 IPR010402 GO:0005515
Vvi5g0888 391 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 92 371 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0888 Vvi-Chr5 9258167 9260111 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0888 320 368 C2C2-CO-like Transcription Factor Family AT5G24930 40.741 2.76e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi5g0888 CCT 3.4e-12 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0888 - - vvi:100242670 686.411