Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0885 ATGGTCCTTCAACTAAAAACTTATTCTAATCTTCTAGCAAATGCTTCTGGAGAGGATCAAGCCAATGGTGTATCTGATTCATCACAATTTGATATTGCTTCCTCTCCCAATGGCGAGGTGAAAATTTCCCTCATCCTCAACACTTCTCAGCAATCTGGTTGTCACATTCCAAATTTAGATGCAGTTTCAAAAGCACTGGAGGATAAGTGCCGTGGCACGTATGGAATTACAGAACCTAGTTTCTCAGTGATGAAATTGATGCAAGAATTCTGTGAGTACTTCTTAGCAATAGGTGCTGATTCTACCGATGACGAAAAGTTAAAGACCATGGAAACATCATCAACACTTGATATATTAAAGGAACCTGCAGCACAAGATGTGCTTGGCAGAGGTGATCATAAAGGCAAGTTTTGCATTCCATCAAGTTCTTCAAATGGATCTGTCAAATGTCAGAATCTTGTTGAAGTGGGTCAAAAAATTCCAAGACCTATATACATGAATGGTTTGGATATTCTTCGCTGCACTTTAACTTCAAATAAGGTTAACAAAAGCTGTTACATTGAAAGGGATGAGAATTTAAAGGTATTGAGAGGCCCAGAATCTTTGAATTCATGTGGTATAGTGGCTGTTCAGAAGCATTGTTTCTCTGTTGACACAGTGAAACCCCTTCAATATTTTGATGACATAACCAAAGGTGAAGAAATGGTAAAGATCTCCTTGGTAAATGGAACCAGCTCCCAACTTCCTCCCAACTTTTTCTACATTCCACAGAACATAGTTTTCCAAAAAGCATATGTGAATTTTGCGCTTGCTCGTATATCAGATGAAGATTGTTGTTCAAATTGTTTTGGGGATTGTACATCATTGGCCATACCTTGTGCATGTGCCCGTGAAACTGGGGGTGAATTTGCTTACCAACAAGGAGGACTTGTAAAGGAAAAGTTTCTAGAGGAATGTATCTCTATGAATCGTGACCCTCAAAACCATCGCCTTTTTTATTGCAAAAATTGCCCACTAGAAAGGTCTAGGAATGAAAACACATCTAATCCATGCAAAGGCCATTTAGTGAGAAAGTTCATAAAAGAGTGCTGGTGTAAATGTGGATGCAGTAAGAAGTGTGGAAACCGGGTTGTTCAGCGTGGTATAACAGTGAATTTGCAGGTATTTTTGACTCCTGAAGGGAAAGGTTGGGGTCTCCGAACTCTGGAGAACTTGCCAAAAGGTGCTTTTGTTTGTGAATATGTGGGAGAAATAGTAACCAACACAGAATTATATGAGCGAAATTTGCGAAGCACCGGTAAGGAGCGACATACATACCCAGTGCTGCTAGATGCAGATTGGGGTTCAGAGGGAGTCTTAAAGGATGAAGAAGCCCTTTGTTTGGATGCAACATTTTATGGTAATGTTGCAAGATTTATTAATCACAGATGTTTTGATGCCAACTTGGTTGAGATCCCAGTAGAAGTGGAGACCCCAGATCATCACTATTATCATCTTGCCTTTTTCACAACAAGAAAGGTCGATGCTTTGGAAGAGCTGACTTGGGACTATGGCATTGACTTTGATGACCATAATCATCCAGTGAAGGCATTCCGATGTTGCTGTGAAAGCAAGGGCTGCCGAGACACAAGGAATTCAAAGAGACATGGTGTTAAAAGGCGAAAGATGGAGATGAAGGCGTAA 1683 0.4034 MVLQLKTYSNLLANASGEDQANGVSDSSQFDIASSPNGEVKISLILNTSQQSGCHIPNLDAVSKALEDKCRGTYGITEPSFSVMKLMQEFCEYFLAIGADSTDDEKLKTMETSSTLDILKEPAAQDVLGRGDHKGKFCIPSSSSNGSVKCQNLVEVGQKIPRPIYMNGLDILRCTLTSNKVNKSCYIERDENLKVLRGPESLNSCGIVAVQKHCFSVDTVKPLQYFDDITKGEEMVKISLVNGTSSQLPPNFFYIPQNIVFQKAYVNFALARISDEDCCSNCFGDCTSLAIPCACARETGGEFAYQQGGLVKEKFLEECISMNRDPQNHRLFYCKNCPLERSRNENTSNPCKGHLVRKFIKECWCKCGCSKKCGNRVVQRGITVNLQVFLTPEGKGWGLRTLENLPKGAFVCEYVGEIVTNTELYERNLRSTGKERHTYPVLLDADWGSEGVLKDEEALCLDATFYGNVARFINHRCFDANLVEIPVEVETPDHHYYHLAFFTTRKVDALEELTWDYGIDFDDHNHPVKAFRCCCESKGCRDTRNSKRHGVKRRKMEMKA* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0885 560 SMART set_7 384 524 IPR001214 GO:0005515
Vvi5g0885 560 SMART preset_2 226 368 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vvi5g0885 560 CDD SET_SETDB-like 250 518 - -
Vvi5g0885 560 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 559 IPR025776 -
Vvi5g0885 560 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 28 550 - -
Vvi5g0885 560 ProSiteProfiles SET domain profile. 384 518 IPR001214 GO:0005515
Vvi5g0885 560 Pfam SET domain 396 518 IPR001214 GO:0005515
Vvi5g0885 560 Gene3D SET domain 229 543 IPR046341 -
Vvi5g0885 560 SUPERFAMILY SET domain 238 541 IPR046341 -
Vvi5g0885 560 Pfam Pre-SET motif 229 376 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vvi5g0885 560 ProSiteProfiles Pre-SET domain profile. 278 381 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vvi5g0885 560 FunFam SET-domain containing protein lysine methyltransferase family protein 229 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0885 Vvi-Chr5 9227788 9230583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0885 194 543 Su(var)3-9 homologs AT1G73100 27.419 1.05e-29 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vvi5g0885 Pre-SET 8.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0885 - - vvi:100252920 1130.93