Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0884 ATGTCGAAGCGAGGTCGTGGAGGATCGGCCGGAAACAAGTTCCGGATGTCGCTGGGTCTTCCAGTGGCAGCGACGGTGAACTGTGCCGATAACACCGGGGCGAAGAACCTTTACATCATATCGGTGAAGGGGATCAAGGGTCGCCTGAACAGGTTGCCTTCGGCTTGTGTGGGCGATATGGTGATGGCTACTGTCAAGAAAGGGAAGCCTGATCTCCGGAAGAAGGTCATGCCCGCCGTCATCGTCCGGCAACGCAAGCCGTGGCGCCGAAAGGATGGCGTCTACATGTACTTTGAAGACAATGCTGGTGTCATCGTGAACCCAAAGGGAGAAATGAAAGGTTCGGCTATTACTGGTCCAATTGGTAAGGAGTGTGCTGATCTGTGGCCCAGGATTGCCAGCGCAGCAAATGCCATTGTTTAA 423 0.5437 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0884 140 SMART Ribosomal_L14_2 19 140 IPR000218 GO:0003735|GO:0005840|GO:0006412
Vvi5g0884 140 ProSitePatterns Ribosomal protein L14 signature. 79 105 IPR019972 -
Vvi5g0884 140 Gene3D Ribosomal protein L14 1 140 IPR036853 GO:0003735|GO:0005840|GO:0006412
Vvi5g0884 140 SUPERFAMILY Ribosomal protein L14 11 140 IPR036853 GO:0003735|GO:0005840|GO:0006412
Vvi5g0884 140 Hamap 50S ribosomal protein L14 [rplN]. 19 140 IPR000218 GO:0003735|GO:0005840|GO:0006412
Vvi5g0884 140 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 20 139 IPR000218 GO:0003735|GO:0005840|GO:0006412
Vvi5g0884 140 FunFam 60S ribosomal protein L23 1 140 - -
Vvi5g0884 140 Pfam Ribosomal protein L14p/L23e 22 140 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0884 Vvi-Chr5 9223412 9225849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0884 1 140 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 97.143 1.74e-98 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0884 K02894 - pvy:116140016 284.648