Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0876 ATGTATACCTTTAGCGGTGATGAGACTGCTCCATTCTTCGGTTTCCTCGATGTTGCTGTCGTCCTTGTTTTCTCTTGTATGGGAGCGACATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCTATGGGTGTGATGAGATCGAAGCTTGTTATGAAGTTGATCATTCCAGTTGTTATGGCAAGAGTATTGGGTATTTATGGTTTGATTATTGCGATTATCATTAGTACTGATGGTGCTCACAGAATCCCTCATATTTTCCTTGGAGATTATCTCTTAAGGGGAGGTAATGGCTGTCGATCTATTAATTTTGTGGGAGGGAATGAAGGAAGTAAATCGTTTACTGGAACCAGTAAGATCAATTCATCTGGAGGTTTGAGTAATTATAATTCAATGCTTACTTCTAATTTTGATGGAAAAGGGACATGGCTTATATTCAATTTAGGGGACACGATCTATATCAACGATTTTAATTCACAAGATAAGGATCCTATAAAAGCAATACACTTTAGCAATTCAAACCCTGTCTGCCATGCATTTGATGCAAAAGCTAAAGACGGGCATGACTTGCTTATTGGATTGAATTCTATAAATGTCTATTCGGACTCTTTGAGACATCAATTACAAGATTTTGGGAAGAAACTTGTTGGTGCCCAACATTATAACAAATATGGTTCTGTTAGTACCAATTATTGTACTAGCATCGCTTTGATTCCTCAAGGCTATGGTGTCTTTGTTGTTGCTCACTCTGTTGGAAACTTGTCCATGTATGAAAAGGCTAAGGATGGAACAGGATCATTACTGTTGCACATACATGGTACAGTAAGGAGTTTGGAGTTACTCGCAGCTGCATCTAGGAAAATTCTCTCTAAGGAAGCACATCCGAGAGCATATGAAAGGAAGATTAGAGGGGATTTTGGGAAGGGGGCATCTTAG 936 0.3964 MYTFSGDETAPFFGFLDVAVVLVFSCMGATYGTAKSGVGVASMGVMRSKLVMKLIIPVVMARVLGIYGLIIAIIISTDGAHRIPHIFLGDYLLRGGNGCRSINFVGGNEGSKSFTGTSKINSSGGLSNYNSMLTSNFDGKGTWLIFNLGDTIYINDFNSQDKDPIKAIHFSNSNPVCHAFDAKAKDGHDLLIGLNSINVYSDSLRHQLQDFGKKLVGAQHYNKYGSVSTNYCTSIALIPQGYGVFVVAHSVGNLSMYEKAKDGTGSLLLHIHGTVRSLELLAAASRKILSKEAHPRAYERKIRGDFGKGAS* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0876 311 PANTHER WD REPEAT PROTEIN 95 273 - -
Vvi5g0876 311 Pfam ATP synthase subunit C 19 75 IPR002379 GO:0015078|GO:0033177|GO:1902600
Vvi5g0876 311 CDD ATP-synt_Vo_c_ATP6C_rpt1 12 69 - -
Vvi5g0876 311 NCBIfam V-type ATPase subunit C 12 78 IPR011555 GO:0033179|GO:0046961|GO:1902600
Vvi5g0876 311 Gene3D - 10 93 IPR035921 -
Vvi5g0876 311 PRINTS Vacuolar ATP synthase 16kDa subunit signature 29 53 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vvi5g0876 311 PRINTS Vacuolar ATP synthase 16kDa subunit signature 55 79 IPR000245 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0876 Vvi-Chr5 9150851 9151786 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0876 1 77 Primary Pumps ATPases(2) AT2G16510 84.416 3.66e-37 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0876 K24741 - vvi:100255339 286.189