Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0873 ATGGATTCAGATCAAGGCAAGTTATTCATCGGTGGGATTTCATGGGAAACCTCGGAAGATAAGCTGAAGGAGTATTTTGGGAGCTACGGTGAGGTTTCTCAGGCGGTGGTGATGAGGGACAAGGCCACTGGGAGGCCCAGAGGGTTTGGCTTTGTGGTCTTTGCAGATCCTTCGATTCTCGATAGGGTTCTTCAGGAAAAACACATCATCGATGGTAGAACGGTTGAAGCTAAGAGGGCCTTATCAAGAGAGGAGCAGCAAACCTCCTCTAGAGCTGGAAATTTTAATTCTGCAAGGAACTCTGGAGGTGGTGGAAATGTAAAGACCAAGAAAATATTTGTTGGAGGGTTGCCTCCCACCCTGAGTGAAGAAGGATTTCGTCAGTATTTTGAAGCTTTTGGTCATGTGACTGATGTAGTAGTAATGTATGACCAGAGTACCCAGCGGCCTCGTGGGTTTGGATTTGTTTCCTTTGACACTGAAGATGCAGTTGATAGGGTTTTATACAAAACTTTTCATGATTTGAATGGTAAGCAAGTGGAAGTTAAGCGGGCCCTTCCTAAAGATGCCAACCCAGGTGGGGGAAGCCGTTCTATGGGTGGTGGTGCAGGTGCGGTTGCAGGAGGTTATCAGGGCTATGGTGCTTCTGGGGGTAACCCAACTACATATGATGGTCGAATGGATTCCAATAGATACATGCAACCTCAGAATACAGGAGGTGGTTTTCCACCTTATGGTTCTTCTGGGTACAGTGCACCTGGCTATGGGTATGGTCCTGCCAATAATGGTATGGGATATGGTGGTTATGGTGGTTACGGTGGTGCCAATCCTGGATATGGAGGCCCTGCTGGTGCACCCTATGGAAACCCAAATGTCCCAAATGCTGGTTATGCAGGTGGACCACCTGGTGCCCCTAGAAGTTCATGGAACTCTCAAGCACCCTCAGGATATGGTGGTGTGGGCTATGGAAATGCTGCTTCTTGGGGTTCAAGCGCTGGTGGTGGTGCTGGAAGTGGTGGTACTGGTTCAGCATCTTCAGGTCAATCTCCTAGCGGAGCTGCTGGGTATGGAAATCAAAGTTATGGATATGGAGGGTATGGTGGAAGTGAGGGATCTTACGCAAATCCAACTGGTTATGGTGCTGTTGGAGGGCGTACTGGTAGTGGTCCAAATAGCAATGCTGGTGGGGGAGAGCTACAGGGGAGTGGTGGTGGCTACATGGGAGGTGGCTATGGTGATGCTAATGGGAATTCAGGATATGGAAATGCAGCATGGAAATCTGATCCATCACAGGCTTCTGGAAATTATGGAGCTCAGACAAATGGTCCTCATGGTGGGCAAGTTGGCTATGGTGGTGGATATAGTGCTCAGTCCCGACAAGCCCAGCAGCAGTAG 1395 0.4918 MDSDQGKLFIGGISWETSEDKLKEYFGSYGEVSQAVVMRDKATGRPRGFGFVVFADPSILDRVLQEKHIIDGRTVEAKRALSREEQQTSSRAGNFNSARNSGGGGNVKTKKIFVGGLPPTLSEEGFRQYFEAFGHVTDVVVMYDQSTQRPRGFGFVSFDTEDAVDRVLYKTFHDLNGKQVEVKRALPKDANPGGGSRSMGGGAGAVAGGYQGYGASGGNPTTYDGRMDSNRYMQPQNTGGGFPPYGSSGYSAPGYGYGPANNGMGYGGYGGYGGANPGYGGPAGAPYGNPNVPNAGYAGGPPGAPRSSWNSQAPSGYGGVGYGNAASWGSSAGGGAGSGGTGSASSGQSPSGAAGYGNQSYGYGGYGGSEGSYANPTGYGAVGGRTGSGPNSNAGGGELQGSGGGYMGGGYGDANGNSGYGNAAWKSDPSQASGNYGAQTNGPHGGQVGYGGGYSAQSRQAQQQ* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0873 464 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 171 IPR000504 GO:0003723
Vvi5g0873 464 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 74 IPR000504 GO:0003723
Vvi5g0873 464 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Vvi5g0873 464 MobiDBLite consensus disorder prediction 420 442 - -
Vvi5g0873 464 FunFam heterogeneous nuclear ribonucleoprotein 1 105 226 - -
Vvi5g0873 464 MobiDBLite consensus disorder prediction 384 464 - -
Vvi5g0873 464 SUPERFAMILY RNA-binding domain, RBD 3 105 IPR035979 GO:0003676
Vvi5g0873 464 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Vvi5g0873 464 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 464 - -
Vvi5g0873 464 SMART rrm1_1 7 78 IPR000504 GO:0003723
Vvi5g0873 464 SMART rrm1_1 111 183 IPR000504 GO:0003723
Vvi5g0873 464 MobiDBLite consensus disorder prediction 219 244 - -
Vvi5g0873 464 SUPERFAMILY RNA-binding domain, RBD 108 217 IPR035979 GO:0003676
Vvi5g0873 464 MobiDBLite consensus disorder prediction 332 353 - -
Vvi5g0873 464 CDD RRM2_Hrp1p 111 188 - -
Vvi5g0873 464 MobiDBLite consensus disorder prediction 80 104 - -
Vvi5g0873 464 MobiDBLite consensus disorder prediction 86 104 - -
Vvi5g0873 464 Gene3D - 86 205 IPR012677 -
Vvi5g0873 464 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 187 IPR000504 GO:0003723
Vvi5g0873 464 Gene3D - 4 85 IPR012677 -
Vvi5g0873 464 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Vvi5g0873 464 MobiDBLite consensus disorder prediction 334 353 - -
Vvi5g0873 464 MobiDBLite consensus disorder prediction 219 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0873 Vvi-Chr5 9112101 9114747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0873 8 182 Eukaryotic Initiation Factors Gene Family AT2G23350 24.719 2.24e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0873 K14411 - vvi:100257917 630.943