Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0854 ATGGTTGGTGGCAAGTTAAAATTGGAGTTGATCGGTAATGAAAAAATCCGGCACAGAACTTTCCAAAATAGACAAAAGGGTCTGAGGAAAAAAGTTCATGAGCTGTCAACTCTATGTGGTGTTGAAGCATGTATGATCATCTGTTGTCCAAATGGCAACGGCACCTATTCTTCTCAGTCTTGTGTTTGGCCTGAAAATCACTACGAAGTTGAACGGATAATTCTCAAGTACATCAATGAGAGGAAGGAAGAGCATGGAAAGAGGACGGTTGATTTATCTGGTGTTCTTGAAAGCAGAAAGACGAGGGCCAAATTTGAGCTCCAAAAGTTGCAGGAAAAAAATGGCGAAACCAAAGGGCAGACTTCTGAGACTGGATTGGAATTGGATGGGCTTTCCTATGAAAAGCTGATGGAAATTGTTAATAAGTTGGACAAGAAACTTGAAAGTGTGGAGAGTCTGATTGATTTGAAGAGGGGAGAAGCGGGTTGGATGAGTGAGACTCTTGTAAACTGCCCTGATCATATGCCGGGTTTGCCTACAGCTGAGCCAATTGATATCCATGTGGCCATGGATGAGTCAGCCTTTCAAGGCTCTGAAATGGTCTGGTATGATTTGGATTTTCCTGAACTAAGTGATGGAGGGGTTGAATCTGATTTGACCTGGACGATGATGAATTTGGAGAATAACGAATGTCCAGAACTTGGAGGTGGAAAGACATCCAGCAGTGAGCTCCTGTACCAAAGTGATCCTTCAACTTCATATCAGAAGATGGGGACTGTTCCTACCATGCAAGGCACTGAAACGATCTTCTATGATTTGGATTTTGCTGATCTAAGTAATGGAGGGGTTGAATTTGATTTGAATTGGATAAACATGGAGAACAACGAATACCTACAACTTGGAGGTGGAAGGGCATCCAGTAGCGACCTCCTGTACCAGAGTGATCCAGCTCATGGGATGTTCCAGAACACCGATCCTTCAACTTCATATCAGAATATGGGGACTGTTCCTACCATGCAAGGGATGTCGGTATCCGAGAATACGATGATGTTTTAA 1056 0.4318 MVGGKLKLELIGNEKIRHRTFQNRQKGLRKKVHELSTLCGVEACMIICCPNGNGTYSSQSCVWPENHYEVERIILKYINERKEEHGKRTVDLSGVLESRKTRAKFELQKLQEKNGETKGQTSETGLELDGLSYEKLMEIVNKLDKKLESVESLIDLKRGEAGWMSETLVNCPDHMPGLPTAEPIDIHVAMDESAFQGSEMVWYDLDFPELSDGGVESDLTWTMMNLENNECPELGGGKTSSSELLYQSDPSTSYQKMGTVPTMQGTETIFYDLDFADLSNGGVEFDLNWINMENNEYLQLGGGRASSSDLLYQSDPAHGMFQNTDPSTSYQNMGTVPTMQGMSVSENTMMF* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0854 351 Coils Coil 133 153 - -
Vvi5g0854 351 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi5g0854 351 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi5g0854 351 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi5g0854 351 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Vvi5g0854 351 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi5g0854 351 CDD MADS_SRF_like 5 91 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vvi5g0854 351 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 53 IPR002100 GO:0003677|GO:0046983
Vvi5g0854 351 SUPERFAMILY SRF-like 4 94 IPR036879 GO:0003677|GO:0046983
Vvi5g0854 351 Gene3D - 13 103 IPR036879 GO:0003677|GO:0046983
Vvi5g0854 351 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0854 Vvi-Chr5 8792525 8793580 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0854 4 118 Type I MADS-box Gene Family AT1G65330 36.522 5.01e-15 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi5g0854 SRF-TF 1.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0854 - - vvi:109124052 638.647