Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0853 ATGACAAGTAAGAATTGGATGAACAAGAGAGGATTCAGCATTAGAGGCAGGTTGAGGAAGATGATGAAGTGCATTTGTTCAGGGGAGCAGTTAAGAGTGGATGAAATAATTCCTTCGTCGGAGTCTCTGGCGACCCGGGACTATTCTGCAAGTGGATACTCTTCTCGAGCTGGTGACAATGAAAGGAAGCCCGATACAAGCAACATTGAGGAAGCAGAGTCATCTCTCCGGGAAAGTGGTTTTTTGAACTATGAGGAAGCAAGAGCTTTATTAGGAAGGCTTGAGTATCAAAAGGGAAATATAGAAGCGGCTCTTCATGTATTTGAAGGAATAGACATTGCCGCTGTAACTCCCAAGATGAAACTCTCCATTGCTAGAAGGTGCGAACTGCACAGACGCCGTTCACAAAGTGAGGCTATCCCACCTATGTCCATGCATGCTGTTAGTTTACTTATTGAAGCAATTTTCCTCAAGGCAAAATCACTGCAGGCTCTTGGGAGATTTGGAGAAGCTGCTCAATCATGCAAAGTTATTCTGGACACTGTTGAATCTGCATTACCTGAAGGCTTGCCTGAGAACTTTGCTGCTGATTGTAAATTGCTGGAGACTCTGAACAAGGCTGTTGAGTTGCTTCCTGAGCTTTGGAAACTTGCTGGTTCTCCCCAAGAAGCAATCCTGTCATATCGGCAGGCCCTCCTCCATAATTGGAATCTTGACATGGAAACCGCAACAAAGATAGAAAAGGAATTTGCAATATTTCTTCTGTATAGTGGTAGTGATGCAAGTCCTCCAAATCTTCGTTCCCAGATGGAAGGCTCCTTTGTACCAAGGAACAATATAGAAGAGGCTATTCTTCTGTTAATGATTCTGCTAAGAAAGTTTGTTCTCAAAAGAATTGCATGGGACCCATCAATCATCGATCACCTTTCATTTGCTTTGTCTGTTTCAGGTGAGTTAAGGACTCTTGCCCATCAGGTTGAACTCTTGCTTCCTGGAATCATGGAAAGAAAAGAAAGATTTAGCACTTTAGCTCTTTGCTACCATGGGGAAGGTGAGGATATGGTTGCTTTGAATCTGTTGAGGAACTTGTTGAATAACAGAGATAACCCAGACTGCACACTAGAATTATTGCTGGCTTCAAAAATTTGTGGGGAGAATGTTGATTGCACAGATGAAGGGACAGATTATGCTCACAAAGCACTTTCCAAGTTACAAGGAAGATGCAAACAGATGGCAAGTGTTGCCAATTGCTTACTCGGTGTTTCATTATCTGCTAAATCAAGATCTTCTCCCTCTGATTATGATAGGATTCTGAGACAGTATGAGGCACTTGAGGCACTAGAAACTGCTGAAAGAACAATGATAGATAGGGATCCGAATGTTTTATTCCATCTTAGTCTAGAAAATGCTGAACAGAGAAAGTTGGATGCTGCACTTCATTATGCAAGGCAGCTGTTGAAAATTGAGGCTGGGTCTAGTGTTAAAGGGTGGATCCTTTTGGCTAGAATATTGTCTGCTCAAAAACAGTTTGAAGATGCTGAGTGTGTAATTAATGCTGCTATGGATCAGACTGGGAAGTGGGATCAAGGAGAATTGTTGCGTACTAAAGCTAAACTCCAGATTGCACAGGGCCGTTTAAAGAATGCAATAGAGACCTATACTCATCTTCTTGCTGTTCTTCAAGTTCGGAATAAAAACTTTAGAGTTGGGAAGCAACTTCTGAAGAACAGGGCAAACCATCACAGAAGGTTGGAAATGGAAACATGGCATGATCTAGCTAATGTATACACAAGCTTGTCACAGTGGCGGGATGCTGAGGTCTGTCTTTCAAAATCAAAGGCTATTGGTTCTCATTCTGCATCTAGATGGCATTCAACAGGTTTACTGTATGAGGCTAAGGGACTTCACAAAGAGGCATTGAAATCATTCGGGAAAGCTTTGGATGTTGAACCATCCCATGTCCCAAGCTTGATCTCCACAGCAACTGTTCTGAGAAAGCTGAGCGACCAATCATTACCAGCTGTGAGAAGCTTTCTGACTGATGCTCTCCGTATCGACAGAACAAACCCTTCTGCATGGTACAATCTTGGGTTGGTATGCAAAGCTGAGATGGGTGCATCGGCAGTGGAAGCTACCGAATGTTTTGAGGCTGCAGCATTTCTTCAAGAAACTGCACCAGTTGAACCCTTTAGATGA 2196 0.429 MTSKNWMNKRGFSIRGRLRKMMKCICSGEQLRVDEIIPSSESLATRDYSASGYSSRAGDNERKPDTSNIEEAESSLRESGFLNYEEARALLGRLEYQKGNIEAALHVFEGIDIAAVTPKMKLSIARRCELHRRRSQSEAIPPMSMHAVSLLIEAIFLKAKSLQALGRFGEAAQSCKVILDTVESALPEGLPENFAADCKLLETLNKAVELLPELWKLAGSPQEAILSYRQALLHNWNLDMETATKIEKEFAIFLLYSGSDASPPNLRSQMEGSFVPRNNIEEAILLLMILLRKFVLKRIAWDPSIIDHLSFALSVSGELRTLAHQVELLLPGIMERKERFSTLALCYHGEGEDMVALNLLRNLLNNRDNPDCTLELLLASKICGENVDCTDEGTDYAHKALSKLQGRCKQMASVANCLLGVSLSAKSRSSPSDYDRILRQYEALEALETAERTMIDRDPNVLFHLSLENAEQRKLDAALHYARQLLKIEAGSSVKGWILLARILSAQKQFEDAECVINAAMDQTGKWDQGELLRTKAKLQIAQGRLKNAIETYTHLLAVLQVRNKNFRVGKQLLKNRANHHRRLEMETWHDLANVYTSLSQWRDAEVCLSKSKAIGSHSASRWHSTGLLYEAKGLHKEALKSFGKALDVEPSHVPSLISTATVLRKLSDQSLPAVRSFLTDALRIDRTNPSAWYNLGLVCKAEMGASAVEATECFEAAAFLQETAPVEPFR* 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0853 731 ProSiteProfiles TPR repeat profile. 620 653 IPR019734 GO:0005515
Vvi5g0853 731 PANTHER PROTEIN NPG1 22 731 IPR043376 -
Vvi5g0853 731 Pfam Tetratricopeptide repeat 622 653 IPR019734 GO:0005515
Vvi5g0853 731 SUPERFAMILY TPR-like 448 556 IPR011990 GO:0005515
Vvi5g0853 731 SMART tpr_5 494 527 IPR019734 GO:0005515
Vvi5g0853 731 SMART tpr_5 586 619 IPR019734 GO:0005515
Vvi5g0853 731 SMART tpr_5 459 492 IPR019734 GO:0005515
Vvi5g0853 731 SMART tpr_5 620 653 IPR019734 GO:0005515
Vvi5g0853 731 SMART tpr_5 152 185 IPR019734 GO:0005515
Vvi5g0853 731 SMART tpr_5 530 563 IPR019734 GO:0005515
Vvi5g0853 731 SUPERFAMILY TPR-like 530 700 IPR011990 GO:0005515
Vvi5g0853 731 Gene3D Tetratricopeptide repeat domain 567 726 IPR011990 GO:0005515
Vvi5g0853 731 Gene3D Tetratricopeptide repeat domain 53 566 IPR011990 GO:0005515
Vvi5g0853 731 MobiDBLite consensus disorder prediction 58 72 - -
Vvi5g0853 731 MobiDBLite consensus disorder prediction 48 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0853 Vvi-Chr5 8773768 8779085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0853 14 731 Calmodulin-binding Proteins AT4G28600 56.617 0.0 770
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0853 K21843 - vvi:100261272 1398.26