Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0840 ATGGAGTTTTTTAATTTATATAATTTACATGGTCATAAGGTTTTGAACCAAATTAGACTTATATCGGGCTTCAACTCCCCCAAAAAGGCCCAAAGGGCTTCCAAGCCCAATACCATCGTAACACAAAGATCAAGGACCCAGATCGGTCCAAAACGGACTATAAAGAAACCCAGAAAAACCCTAAGCCCCGTCTCTCCATCTACCCCCCTTGCATCTTCCATTTTTCCCCTCCCTGCTGTCAGCCGCGCCCTAGCAAATATGCCTTTCAAGCGGTACGTGGAGGTCGGGCGAGTCGCTCTCGTCAACTACGGAAAAGACTACGGCAGGCTCGTCGTCATAGTCGACGTCATTGATCAGAATCGGGCCCTTGTGGACGCACCTGATATGGTGAGATGCCAAATGAACTTTAAGAGGCTTTCACTCACAGATATCAAAATTGACATCAAAAGGGTGCCTAAGAAAAAAACATTGATTGAAGCAATGACTGCTGCAGATGTTAAGAACAAGTGGGAGAATAGCTCCTGGGGCAGAAAGCTGATTGTGCAGAAGAGGAGAGCATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCATCCTAG 663 0.4585 MEFFNLYNLHGHKVLNQIRLISGFNSPKKAQRASKPNTIVTQRSRTQIGPKRTIKKPRKTLSPVSPSTPLASSIFPLPAVSRALANMPFKRYVEVGRVALVNYGKDYGRLVVIVDVIDQNRALVDAPDMVRCQMNFKRLSLTDIKIDIKRVPKKKTLIEAMTAADVKNKWENSSWGRKLIVQKRRASLNDFDRFKIMLAKIKRGGVIRQELAKLKKQTAS* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0840 220 Gene3D - 178 213 - -
Vvi5g0840 220 FunFam 60S ribosomal protein L14-1 87 170 - -
Vvi5g0840 220 Gene3D - 87 170 IPR014722 -
Vvi5g0840 220 PANTHER 60S RIBOSOMAL PROTEIN L14 87 217 IPR039660 GO:0003723|GO:0003735
Vvi5g0840 220 Pfam Ribosomal protein L14 131 203 IPR002784 GO:0003735|GO:0005840|GO:0006412
Vvi5g0840 220 SUPERFAMILY Translation proteins SH3-like domain 91 179 IPR008991 -
Vvi5g0840 220 CDD KOW_RPL14 93 165 IPR041985 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0840 Vvi-Chr5 8550008 8553417 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0840 87 220 Cytoplasmic Ribosomal Protein Gene Family AT4G27090 83.582 2.28e-79 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0840 K02875 - vvi:100264927 264.233