Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0838 ATGGGGCTCAAGAATCTTCATCTCAGGCTCAAGGCATTTAGGCTGAGACAGCTGCTGGTGGGGGATTCAAGGAGCAAGAAAAGACGGTCTCTTACCACCCAGAAGCCGTCTTGGATGGTGCCTATTTCTCATGGGTATCATGTAATCGAGGATCGATCTTTCGGAGGAGCTTGTGATTGTGGTTTCGAGGAGGAAAATTCAGACTCTGTGGTGGTGCAGAGAGAGCAGATTGAAGAGATGGAAGTCTGGTTTTTTGGAGTTTCTGACAGTAGAATCGGTGATGGAATTACGAAGTCCATGCAATCCCATTTCTTTGACAGGAAGCCCAAAGAGTCCCAAATAAGTAGAAAGAGCAAAGAAGCAATGAAGAAGGCATACCTGGGCGCAAAGGCAAAGGTGACAGAAATAGAGAACGCAGATGAGGCTTGGAAAGTGGGTTCAGCATCAGCCATGGTGATGAATGGGGAAAAGCTGGTGCTGGCTAACATGGGTGATTACAGGGCTGTTGTGTGTAAAGATGGTGTGGCTCACCAGATTGGCAGAAAGCACCGCCACACAGGCAAACAAAGTTGGATTCGTAGACTCATTTCAGGTGCTTTCCACATGCCTAAAGTTCGCATGTTGGCATTCAACTCGGGCACTACAGGGGATGATAGGCAACCTAAAAGCTTGGGAGTGTTTGTGGGTGCTGAAAGTATTGATTCCAATACAGAATTTATCATCTTGGCAAGCACTGGCATATGGGAGGTGATAAAGAATCAAGAGGCTGTGAATCTCATCAGGCACATAGAGAATGCACAAGAAGCTGCTGAGTGCTTAGCAAAGGAGGCTTTAACTAGAATGAGTAGGAGCAACATTTCTTGTTTGGTCATTCACTTCGACTGA 885 0.4644 MGLKNLHLRLKAFRLRQLLVGDSRSKKRRSLTTQKPSWMVPISHGYHVIEDRSFGGACDCGFEEENSDSVVVQREQIEEMEVWFFGVSDSRIGDGITKSMQSHFFDRKPKESQISRKSKEAMKKAYLGAKAKVTEIENADEAWKVGSASAMVMNGEKLVLANMGDYRAVVCKDGVAHQIGRKHRHTGKQSWIRRLISGAFHMPKVRMLAFNSGTTGDDRQPKSLGVFVGAESIDSNTEFIILASTGIWEVIKNQEAVNLIRHIENAQEAAECLAKEALTRMSRSNISCLVIHFD* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0838 294 Coils Coil 256 276 - -
Vvi5g0838 294 ProSiteProfiles PPM-type phosphatase domain profile. 53 293 IPR001932 -
Vvi5g0838 294 Gene3D - 47 294 IPR036457 -
Vvi5g0838 294 PANTHER PROTEIN PHOSPHATASE 39 293 IPR015655 GO:0004722|GO:0006470
Vvi5g0838 294 CDD PP2Cc 52 293 IPR001932 -
Vvi5g0838 294 Pfam Protein phosphatase 2C 60 185 IPR001932 -
Vvi5g0838 294 Pfam Protein phosphatase 2C 232 286 IPR001932 -
Vvi5g0838 294 SUPERFAMILY PP2C-like 41 294 IPR036457 -
Vvi5g0838 294 SMART PP2C_4 41 291 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0838 Vvi-Chr5 8521274 8523753 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0838 1 293 PP2C-type Phosphatase Gene Family AT3G23360 45.238 1.11e-80 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0838 K19704 - vvi:100245916 588.571