Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0831 ATGAAGTCAATAGGATGTTGGTTCAATAAGCTTAAATCAAGAGATAAGGCCAAGTCTTCAAAGAAAGAAGCTACTAATAATGGAAAAGAAGGGTCAAAAGCAGTGACAAGTGAGGAAGCGCCCTCAAATGTGACCAAGCAGAAGGTTGCAGCTGCAAAGCAGTATATAGAAAACCATTATAAGGAGCAGATGAAGAATCTTCAGGAGAGGAAGGAGCGACGTAATATACTAGAGAAGAAATTAGCTGATGCTGAAGTCTCTGAGGAAGAGCAAAATAACCTACTGAAGCATTTGGAGAAGAAGGAAACAGAATATATGCGCCTCCAGAGGCATAAAATGGGTGCGGATGATTTTGAGCCATTGACAATGATAGGAAAAGGTGCATTTGGGGAGGTTAGAGTCTGCAGGGAGAAGAAAACCGGCCATGTATATGCCATGAAGAAGCTTAAGAAATCAGAGATGCTTCGAAGGGGCCAGGTTGAACATGTGAAGGCTGAGAGGAATTTACTTGCAGAGGTTGATAGCAATTGCATTGTCAAACTTTATTGTTCATTCCAAGATGAAGAGTTTCTTTATCTTGTAATGGAATATCTACCTGGTGGAGATATGATGACTTTACTGATGCGAAAGGATACTTTGACTGAAGATGAGGCCAGATTTTATGTTGGTGAAACCGTCCTTGCTATCGAGTCCATCCATAAGCATAATTATATTCATAGAGATATCAAGCCCGACAATTTACTGCTCGATAGATATGGACATATGAAATTGTCAGATTTTGGATTATGTAAACCATTGGATTGCAGTAATCTTCATGAGAAGGACTTTTCTCTAGGAAACAACCTAAGCGGGGCCCTTCAAAGTGATGGGCGCCCTGCAGCACCGAGACGCACACAGCAGGAGCAATTGCAGCATTGGCAGAGGAACAGGAGAATGCTTGCCTATTCTACTGTTGGTACCCCTGACTACATTGCTCCAGAAGTGCTGCTTAAGAAAGGATATGGGATGGAGTGTGATTGGTGGTCTCTTGGTGCTATCATGTACGAAATGCTTGTGGGATATCCACCTTTTTATTCAGATGAACCTATGACAACTTGTAGGAAGATAGTAAACTGGAGAACTCATCTAAAATTTCCAGAAGAAGCAAAGTTATCTCCAGAAGCAAAGGACCTTATTAGTAAGCTCTTATGTAATGTTGACCAGAGGCTTGGAACTAAAGGGGCAGATGAAATAAAGGCTCACCCCTGGTTTGAAGGTGTTGACTGGGACAAATTGTATCAAATTGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGATACCCAAAACTTTGAGAAGTTTGAAGAGGCTGATGACCAAATTCAGACTTCGTCAAAAGCAGGTCCATGGAGGAAGATGCTTTCATCTAAAGACATCAACTTTGTAGGCTACACGTATAAGAACTTTGAAATTGTAAATGATCAGCCAGTACCTGGGATAGCTGAATTGAAGAAGAAGAGCACCAAAACCAAAAGGCCCTCCATCAAGTCCCTCTTTGATGATGAATCTGGTGCAGCTGCCAATGAACCTGTCCAGGGGAGCTTTCTCAACCTCTTACCCCCCAAACTAGAAGTGTCCCAAAAACATGGTGATCCCCATAGACCCCATTAA 1653 0.4192 MKSIGCWFNKLKSRDKAKSSKKEATNNGKEGSKAVTSEEAPSNVTKQKVAAAKQYIENHYKEQMKNLQERKERRNILEKKLADAEVSEEEQNNLLKHLEKKETEYMRLQRHKMGADDFEPLTMIGKGAFGEVRVCREKKTGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEFLYLVMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRYGHMKLSDFGLCKPLDCSNLHEKDFSLGNNLSGALQSDGRPAAPRRTQQEQLQHWQRNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDEPMTTCRKIVNWRTHLKFPEEAKLSPEAKDLISKLLCNVDQRLGTKGADEIKAHPWFEGVDWDKLYQIEAAFIPEVNDELDTQNFEKFEEADDQIQTSSKAGPWRKMLSSKDINFVGYTYKNFEIVNDQPVPGIAELKKKSTKTKRPSIKSLFDDESGAAANEPVQGSFLNLLPPKLEVSQKHGDPHRPH* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0831 550 ProSitePatterns Serine/Threonine protein kinases active-site signature. 237 249 IPR008271 GO:0004672|GO:0006468
Vvi5g0831 550 FunFam Non-specific serine/threonine protein kinase 202 269 - -
Vvi5g0831 550 MobiDBLite consensus disorder prediction 13 28 - -
Vvi5g0831 550 MobiDBLite consensus disorder prediction 29 49 - -
Vvi5g0831 550 Pfam Protein kinase C terminal domain 436 480 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vvi5g0831 550 SMART pkinase_C_6 418 482 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vvi5g0831 550 ProSitePatterns Protein kinases ATP-binding region signature. 124 147 IPR017441 GO:0005524
Vvi5g0831 550 CDD STKc_NDR_like 116 481 - -
Vvi5g0831 550 SMART serkin_6 118 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0831 550 Pfam Protein kinase domain 120 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0831 550 FunFam Non-specific serine/threonine protein kinase 316 435 - -
Vvi5g0831 550 Gene3D Phosphorylase Kinase; domain 1 116 201 - -
Vvi5g0831 550 Gene3D Phosphorylase Kinase; domain 1 436 446 - -
Vvi5g0831 550 PANTHER SERINE/THREONINE-PROTEIN KINASE 27 467 - -
Vvi5g0831 550 ProSiteProfiles Protein kinase domain profile. 118 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0831 550 Coils Coil 60 104 - -
Vvi5g0831 550 CDD MobB_NDR_LATS-like 52 113 - -
Vvi5g0831 550 Gene3D Transferase(Phosphotransferase) domain 1 316 435 - -
Vvi5g0831 550 Gene3D Transferase(Phosphotransferase) domain 1 202 267 - -
Vvi5g0831 550 FunFam Non-specific serine/threonine protein kinase 89 201 - -
Vvi5g0831 550 MobiDBLite consensus disorder prediction 13 50 - -
Vvi5g0831 550 ProSiteProfiles AGC-kinase C-terminal domain profile. 418 490 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vvi5g0831 550 MobiDBLite consensus disorder prediction 503 527 - -
Vvi5g0831 550 SUPERFAMILY Protein kinase-like (PK-like) 93 467 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0831 Vvi-Chr5 8340261 8358700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0831 23 538 AGC Kinase Gene Family AT4G14350 83.915 0.0 913
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Vvi5g0831 Pkinase 7.6e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0831 K08790 - vvi:100252887 1126.69