Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0830 ATGTACACGAAATGGCTGATAATGAAAGTGGAGGAGCCAAGGATAGATCCTGAGGACCGAGGAGCAGAGAAGGCTGCTGCCTTAGGAAGAATGATAAGGGAATTGGTGGCTTCTGAGGCAAGAAAGAAGGCGGCAGCAGCAGAAGTTGAGGAGGAAACAGATGATGACGAGGAGAGAATGAAAGTGGAGATGGCCATAGAAAACATGCAAAAAGAAAAGCCCGTCCGCTTTTCTTCCAAACAACTTGCAGCTTACACTCGGAATTACTCTACCAAACTTGGTTCGGGTGGCTTTGGAGAAGTCTACAAAGCAGAGTTTCCTAATGGAGCGCATATGGCTGTAAAGGTACTAAACCACAATACCAGCATAAGCAAAAGAGTGGAAGAGCAATTCATGACTGAAGTGAGCACCCTTGGTAGAACCTACCATCGGAACCTGGTCAGGCTCTATGGATTCTGCCATGATGCAAAGGCCAAAGCACTGGTCTACGAGTACATGGGGGTCCCTTGA 510 0.4745 MYTKWLIMKVEEPRIDPEDRGAEKAAALGRMIRELVASEARKKAAAAEVEEETDDDEERMKVEMAIENMQKEKPVRFSSKQLAAYTRNYSTKLGSGGFGEVYKAEFPNGAHMAVKVLNHNTSISKRVEEQFMTEVSTLGRTYHRNLVRLYGFCHDAKAKALVYEYMGVP* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0830 169 ProSitePatterns Protein kinases ATP-binding region signature. 93 115 IPR017441 GO:0005524
Vvi5g0830 169 PANTHER OS07G0415500 PROTEIN 58 166 - -
Vvi5g0830 169 Gene3D Phosphorylase Kinase; domain 1 42 165 - -
Vvi5g0830 169 FunFam serine/threonine-protein kinase PBS1-like 47 165 - -
Vvi5g0830 169 ProSiteProfiles Protein kinase domain profile. 87 169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0830 169 SUPERFAMILY Protein kinase-like (PK-like) 69 167 IPR011009 -
Vvi5g0830 169 Pfam Protein tyrosine and serine/threonine kinase 90 166 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0830 Vvi-Chr5 8304325 8304834 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0830 74 166 Receptor kinase-like Gene Family AT1G15530 45.263 1.87e-20 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Vvi5g0830 PK_Tyr_Ser-Thr 2.6e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0830 - - vvi:109122561 309.301