Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0829 ATGAAGAGGATGCCACAGAATCTTGATATAGGAGCAGAGATTAATGCTATCATGAGAGGCCGGTTACCGCAAAGGGAGATGGGGCCTCAGGAGGCAAGAAGAACAGAATCTGCAGGACGTGTGGACGGATCAGGAACAGTGGAGATATGCATCCAAGACATGCTGAAAGAAAAACCCGTCCGCTTTTCTCCTCAACAACTTGCAGCTTTTACCCAGAATTTTTCTACCAAACTTGGTTCAGGCGGCTTTGGACACGTCTACAGAGGAGTCCTTCCTGATGGGGTACAGATAGCCGTAAAAGTACTCAAACACAACAGAGGCCAAGACAAAAGAATGGAAGAGCAGTTCATGGCTGAAGTGAGTACCATCGGAAGAACTTACCACAGAAACCTGGTCAGGCTCTATGGTTTCTGCTTTGATTCTCAGCTCAAAGCGCTAGTCTATGAGTACATGGAAAATGGATCACTTGACACTGTCTTGTTTGGCAGGGAGCATAGAATCGAGTGGGAAAAGTTGTACGAAATTGCGGTTGGCGCAGCCAAGGGGCTTAAGTACTTGCACGATGATTGCCACAAAAGGATCATTCACCATGATATAAAGCCCGGAAATGTTCTGCTTGATTCCGATTTCTGTCCCAAGCTTGCAGATTTTGGACTAGCCAAGCTCTCCAATATGGACAGCACACATGAAAACTTCTCGGGTGGGGGCACTCCAGGATATGCTGCCCCAGAGGTTTGGATGCCATTTCAAGTGACTTACAAGTGCGATGTTTATAGCTTTGGGATGATGCTATTCGAGATTGTTGGACGAAGAAGGAACTTTTACAACTTCCCCGGTGAGGACCAAGACTGGTTTCCAAGACGGGTCTGGGACAAATTTGACGAGGGAGAATTGGAGGGGCTTCTGTTGGAGAGGGGGATCAAGGAGAAGGCGATGGTGAAAGCCAAGAAAATGTGCATGGTAGCTTTGTGGTGTGTCCAATACCTCCCTCAGGACAGACCTTCCATGGATCAAGTGTTGAAGATTTTAGAGGGCGGAGACCAAATTACAACGCCTAAAAACCCATTTCAGCATTTGGCATTATCATCTGATATGCCACCTATCAGCATTGAGAGCAGCACAAACTTTAGGAGTGATGAAACCACTGACAATAGTAGCGCTTGGCTCATGAACAAGTACGAAAGGGAAGGAGGCATCTTCATCTGGATGAACTAA 1215 0.4675 MKRMPQNLDIGAEINAIMRGRLPQREMGPQEARRTESAGRVDGSGTVEICIQDMLKEKPVRFSPQQLAAFTQNFSTKLGSGGFGHVYRGVLPDGVQIAVKVLKHNRGQDKRMEEQFMAEVSTIGRTYHRNLVRLYGFCFDSQLKALVYEYMENGSLDTVLFGREHRIEWEKLYEIAVGAAKGLKYLHDDCHKRIIHHDIKPGNVLLDSDFCPKLADFGLAKLSNMDSTHENFSGGGTPGYAAPEVWMPFQVTYKCDVYSFGMMLFEIVGRRRNFYNFPGEDQDWFPRRVWDKFDEGELEGLLLERGIKEKAMVKAKKMCMVALWCVQYLPQDRPSMDQVLKILEGGDQITTPKNPFQHLALSSDMPPISIESSTNFRSDETTDNSSAWLMNKYEREGGIFIWMN* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0829 404 FunFam Putative receptor-like protein kinase 151 351 - -
Vvi5g0829 404 SUPERFAMILY Protein kinase-like (PK-like) 54 343 IPR011009 -
Vvi5g0829 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Vvi5g0829 404 Gene3D Phosphorylase Kinase; domain 1 49 150 - -
Vvi5g0829 404 ProSiteProfiles Protein kinase domain profile. 72 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0829 404 PANTHER OS07G0415500 PROTEIN 54 356 - -
Vvi5g0829 404 FunFam serine/threonine-protein kinase PBS1-like 46 150 - -
Vvi5g0829 404 Gene3D Transferase(Phosphotransferase) domain 1 151 357 - -
Vvi5g0829 404 SMART serkin_6 72 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0829 404 Pfam Protein tyrosine and serine/threonine kinase 74 342 IPR001245 GO:0004672|GO:0006468
Vvi5g0829 404 ProSitePatterns Protein kinases ATP-binding region signature. 78 100 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0829 Vvi-Chr5 8298503 8299717 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0829 61 403 Receptor kinase-like Gene Family AT5G38280 38.068 1.37e-73 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Vvi5g0829 PK_Tyr_Ser-Thr 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0829 - - vvi:100258020 818.92