Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0828 ATGGCTAATTTTTTAGGAAGGAGGAACAATGAAGTTGTGGCTTCTAATCCGAGAAATGAGGAGGAAGCACCAGAAGCTGGAGACAGAGAAACAGTGGAGATATTCATAGAAAACATGCAAAGAGAAAGCCTTGTCCGGTTTTCTTCCAAACAAGTTGCTGCTTTCACTTGGAACTACTCCACAAAACTTGGTGCCGGCGCTTTTGGTGTAGTCTACAAAGGAGAATTTCCTAACGGGGTGCAGCTAGCGGTCAAGGTACTCAAGTACAATAACAACGTAGACAAAATGATGGAAGTGCAATTCATGGCTGAAGTAAGTACCATTGGAAGAACTCACCATAGGAACCTGGTCAGGCTCTACGGATTCTGCTTTGATGCAAGGACGAAAGCACTGGTCTACGAATATATGGAGAATGGGTCGCTTGACAGGTTGTTGTTTGGCAACGACCATAGAATTGAGTGGGAAAAGTTGTATGAAATTGCAGTTGGGGCCGCCAAGGGGCTTGAGTATCTGCATCATTACGGCCACAAGAGGATAATCCACCATGACATAAAGCCTTGTAATGTTCTCCTTGATTCTAATTTGTGTCCCAAGCTGGCAGATTTTGGACTAGCTAAGCTGTCCGACCTCGATAGCACACATGAAAACTTGTCGCGTGTTGGGGGCACTCCAGGATATGCTGCCCCAGAGGTTTGGACGACATTTCCAGTTACTTACAAGTGTGATGTTTATAGCTTTGGAATGATGTTGTTTGAAATTATTGGACGGAGAAGGAACCTTGACAGCCGCTTAAGTGAGAGCCAAGAGTGGTTTCCCAGACGGGTTTGGGACAAGTTTGATAAGGGAGAATTGGAAGAGATACTGGCAGACAAGGAGATCGAAGAGAAGGACTTGGTGAAAGCGAAGACAATGTGTATGGTAGCTTTGTTCTGTGTCCAGTACATCCCTGAGGCAAGACCTTCCATGATTGATGTGGTAAAGATGTTAGAGGGTGGAGTCCAAGTTACACCGCCTCCAAACCCATTTCAGCATTGGCTAGTATCAACAAGTGATGGAACCACTGAAAATTGCACGATCCAATTCATGATAAAGCATGAGAGTGAAGAGGTATTTTCAGCCAGATGA 1125 0.4489 MANFLGRRNNEVVASNPRNEEEAPEAGDRETVEIFIENMQRESLVRFSSKQVAAFTWNYSTKLGAGAFGVVYKGEFPNGVQLAVKVLKYNNNVDKMMEVQFMAEVSTIGRTHHRNLVRLYGFCFDARTKALVYEYMENGSLDRLLFGNDHRIEWEKLYEIAVGAAKGLEYLHHYGHKRIIHHDIKPCNVLLDSNLCPKLADFGLAKLSDLDSTHENLSRVGGTPGYAAPEVWTTFPVTYKCDVYSFGMMLFEIIGRRRNLDSRLSESQEWFPRRVWDKFDKGELEEILADKEIEEKDLVKAKTMCMVALFCVQYIPEARPSMIDVVKMLEGGVQVTPPPNPFQHWLVSTSDGTTENCTIQFMIKHESEEVFSAR* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0828 374 Pfam Protein tyrosine and serine/threonine kinase 60 329 IPR001245 GO:0004672|GO:0006468
Vvi5g0828 374 ProSiteProfiles Protein kinase domain profile. 57 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0828 374 Gene3D Transferase(Phosphotransferase) domain 1 136 340 - -
Vvi5g0828 374 FunFam PR5-like receptor kinase 136 338 - -
Vvi5g0828 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Vvi5g0828 374 SMART serkin_6 57 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0828 374 PANTHER OS07G0415500 PROTEIN 27 342 - -
Vvi5g0828 374 MobiDBLite consensus disorder prediction 1 27 - -
Vvi5g0828 374 Gene3D Phosphorylase Kinase; domain 1 31 135 - -
Vvi5g0828 374 SUPERFAMILY Protein kinase-like (PK-like) 51 361 IPR011009 -
Vvi5g0828 374 ProSitePatterns Protein kinases ATP-binding region signature. 63 85 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0828 Vvi-Chr5 8294945 8296069 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0828 44 342 Receptor kinase-like Gene Family AT5G38280 42.345 4.53e-75 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Vvi5g0828 PK_Tyr_Ser-Thr 6.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0828 - - vvi:100251174 768.459