Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0825 ATGGGACAACAGCAATCCAAGGACGAGTTGCTTCATCAGCAAGTCGTTTATGGCAACGTTGAAGGGATCAAAGCACTTTCCAGAGAAGGTGCAGGCCTTGAGTGGACCGACAGAGAAGGAAAGACTCCATTGATTGTGGCGTGCATGTTTTCTGAACTTTTCAATGTTGCAAAAACTTTGATTGAATTGGGTGCCAATGTGAACGCTTACCGTCCTGGACGTCATGCTGGAACTCCTTTACATCATGCGGCAAAAAAGGGGCTTGAGGAAACTGTGAACTTGCTTCTTTCACATGGAGCAAATGCGTTAGTGATGAATGATGATTGTCAAACTGCACTTGATGTTGCTAGAGCAAAAGGGCACAGCAGAGTGGTCCGTGTGATTGAGAGCCATATTTGCTTGTTCTCCGGTTGGCTGCGTGAGTTCTATGGGCCAGGCTTTCTGGAAGTACTAGCTCCTCAATGGGTTTCAAGAAAAGTTTGGGTTGTTATTTTACCATGTGGATCACGTAAGCCTACAAAGCCTTTCAAATTGGAGCTTGCTATATATTCTAGCTTGCAGGATGCCCAACCACGTACTACTATTGCACTGTGGAAAGCCAATATGGATGAAGCAAAGTTTGAAGATCCTGATCCTGCAGTGATAATTCTTGATAACTCCACCATCTCAAGGGGCAGGAGGAGGAGACGATGCTACACCTCCCGAGAGGCGAGGTGTAAGCCTCGAGCGCTTAGGCAGACCCAGATTAAACTTGCACCTGAGAAAAAAAGCGACAGTCAGCAACTGCAGTGGTTTTGTAATGCATGCAAGGGAATTCCACAGGCAATGCATCCTCCTGCATTTTTACATAATGCCCAGACTCCAGCTGTTCCACCCACTGCACCACCAACTGCAGAAGATTTAGAATTAGCAATGGCAATTAATGCCTCCATTCAGTCTGCTATGCAGGAGGGGCCACCTCTTCTTGATTCACCTTCAAGTTTTGAAAATGGTGCATCCACCAGTTGGAATAATTCAGTGAATATCACTAATCACAATTGCCCAGATGCTTTAGTAGCACCAGTAGCACCTGCTTCTTCAAAAGCCAGTAGCAGTGAATGTGTAGTTCATGAAGCTGGCCCAAGCACCAATTCCACTCAGCATATCCAGATTGAGACTCACATTCCTGATATACCTGTCCAAGCCTCAACTGCATCAGCTCCACCAATTGCTGATGAGGTTGTAGATGATGGTCCGGTTCAGTATCCATCAATTGATTCCAGCCCTGTTGATTTGACTTCCCCAGCTTTTGAGACATCGGCTGCTGCATCAGAGCAGAGCAAAGAAGGTGGTGCTGCCTCATCGTGTGTCATATGTTTGGATGCTCCAATTGAGGGGGCTTGCATACCATGTGGCCATATGGCTGGATGCATGTCTTGTTTGAATGAAATCAAAGCCAAGAAGTGGGGTTGCCCTGTGTGTCGTGCCAAGATCGACCAGGTTGTAAAGCTGTATTCTGTTTAA 1503 0.4637 MGQQQSKDELLHQQVVYGNVEGIKALSREGAGLEWTDREGKTPLIVACMFSELFNVAKTLIELGANVNAYRPGRHAGTPLHHAAKKGLEETVNLLLSHGANALVMNDDCQTALDVARAKGHSRVVRVIESHICLFSGWLREFYGPGFLEVLAPQWVSRKVWVVILPCGSRKPTKPFKLELAIYSSLQDAQPRTTIALWKANMDEAKFEDPDPAVIILDNSTISRGRRRRRCYTSREARCKPRALRQTQIKLAPEKKSDSQQLQWFCNACKGIPQAMHPPAFLHNAQTPAVPPTAPPTAEDLELAMAINASIQSAMQEGPPLLDSPSSFENGASTSWNNSVNITNHNCPDALVAPVAPASSKASSSECVVHEAGPSTNSTQHIQIETHIPDIPVQASTASAPPIADEVVDDGPVQYPSIDSSPVDLTSPAFETSAAASEQSKEGGAASSCVICLDAPIEGACIPCGHMAGCMSCLNEIKAKKWGCPVCRAKIDQVVKLYSV* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0825 500 ProSiteProfiles Zinc finger RING-type profile. 449 488 IPR001841 -
Vvi5g0825 500 Pfam Ankyrin repeat 40 69 IPR002110 GO:0005515
Vvi5g0825 500 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Vvi5g0825 500 Gene3D - 2 135 IPR036770 -
Vvi5g0825 500 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Vvi5g0825 500 Pfam Zinc finger, C3HC4 type (RING finger) 447 494 - -
Vvi5g0825 500 SUPERFAMILY Ankyrin repeat 8 133 IPR036770 -
Vvi5g0825 500 Pfam Ankyrin repeats (many copies) 78 126 IPR002110 GO:0005515
Vvi5g0825 500 SMART ring_2 449 487 IPR001841 -
Vvi5g0825 500 CDD RING-HC_XBAT35-like 445 498 - -
Vvi5g0825 500 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Vvi5g0825 500 PANTHER ROLLING PEBBLES, ISOFORM B 434 498 - -
Vvi5g0825 500 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
Vvi5g0825 500 SUPERFAMILY RING/U-box 448 494 - -
Vvi5g0825 500 SMART ANK_2a 39 69 IPR002110 GO:0005515
Vvi5g0825 500 SMART ANK_2a 75 104 IPR002110 GO:0005515
Vvi5g0825 500 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 429 499 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0825 Vvi-Chr5 8218938 8230036 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0825 432 497 C3H Transcription Factor Family AT3G06140 30.303 3.57e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0825 - - vvi:104879290 978.008