Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0823 ATGGCAGATCCTGTTAGTTATGGGAATTCTGAGCGTGACATCGAGCAAGCACTTGTTACTTTGAAAAAAGGGACTCAGCTAATCAAGTACAGCCGGAAAGGGAAGCCCAAGTTTCGTCCATTCAGAATCTCTACAGATGAAACGACATTGATCTGGTATTCACATGGAGAAGAAAGAAATTTGAAACTATCTTCTGTATCACGGATTATCCCTGGACAGAGAACTGCTGTTTTTAGAAGATATTTGCGCCCTGAAAAAGATTATTTATCATTTTCACTTCTATACAATAACGGTGAAAGATCTCTTGATCTGATCTGCAAGGACAAAGTTGAAGCTGAAGTTTGGCTTGCGGGTCTCCAGGCATTAATTTCTACTGGACAACATCGTAATAGACGCACCAGAAGTGACATTCCCGATGTGAGAATTTCATTTCAACATCAATATATTTATGCTTATTCTCGTGACTCTTCTTTGAATTGGGCGAGCTCAGATGCGGGGTCAGAACGCACAAATATGCAACTAAGAACAAGTGGAGTGGATGGTTTCCGGATTAGTGTTTCGAGCACTCCTAGCTGCTCAAGTCAAGGTTCTGGACCAGATGACATAGAATCGTTGGGTGATGTTTATGTCTGGGGAGAGGTATGGTGTGATGGGGTTTTACCTGATGGATCAGTGAGCCCATTCCCTATAAAAATAGATGTTCTGACTCCAAAATCCTTGGAGTCAAATGTGGTTCTAGATGTTCATCAGATTGCTTGTGGTGTTCGGCATGTTGCTCTTGTTACCAGGCAAGGAGAAGTTTTCACCTGGGGGGAGGAATCTGGTGGGAGACTTGGCCATGGAATAGATAACGACTTCAGTCGCCCTCATCTTGTTGAATTTCTAGCAGTAAATAATGTGGACTTTGTTGCATGTGGTGAGTATCATACATGTGCTGTATCTACATCCGGTGATTTATTTACCTGGGGTGATGGTACTCATAATGCTGGACTTCTTGGTCATGGCACTGAGGTTAGCCACTGGATACCAAAAAGAGTTTCTGGTCCTTTAGAAGGACTTCAGGTTTTATCTGTTGCATGTGGCACATGGCACTCAGCACTGGCAACTTCCAATGGGAAACTCTTTACATTTGGTGATGGAACTTTTGGTGTTCTAGGCCATGGAGATCGAGAAAGTGTTCCATATCCAAGGGAGGTTCAAATATTAAGTGGACTAAAGACGATTAAGGTTGCATGTGGAGTATGGCATACAGCAGCTATCATAGAGGTTATGAGCCAGTCTGGTACAAATATTTCATCTAGAAAGTTGTTCACCTGGGGTGATGGTGATAAACACCGTTTAGGTCATGGAAGCAAGGAAACTTACCTGCTTCCGACTTGTGTCTCTGCACTTATTGACTATAATTTCCATCAGCTGGCATGTGGACATACTATGACTGTTGCCCTCACTACATCAGGACATGTGTTCACAATGGGTGGTACTGCATATGGTCAACTAGGAAATCCACTTTCTGATGGGAGATTACCTTGTTTGGTACAAGATAAATTGGTCGGTGAGTTTGTTGAAGAAATTTCATGTGGGGCCTATCATGTTGCTGTGCTGACATCAAGAAGTGAAGTATTCACTTGGGGAAGAGGTGCCAATGGAAGATTGGGACATGGGGACACAGAAGATAGGAGATCTCCAACATTTGTCGAAGCGCTAAAAGATAGGAATGTAAAAAGCATATCATGTGGTTCCAATTTCACTGCAAGTATTTGCATTCATAAGTGGGTCTCTGGAGCAGACCAATCAGTTTGCTCTGGTTGCAGGCAGGCATTTGGTTTTACCAGGAAGCGGCACAACTGCTACAACTGTGGGCTAGTGCATTGCCATGCTTGCAGTTCCAAAAAGGCATTAAAAGCTGCATTGGCTCCAACTCCAGGCAAACCGCATCGAGTATGTGACCCTTGCTATGCAAAACTCAAAGCAGCTGAGGCTGGAGATGCCTCTATTTTTAATAGGAAAAACACTGTCCCCCGCCGATCAATAGATGCAACAATCAGGTCAGATAGAGGAGAGGTAAGGTCTGCAAGGATTCTGATGTCTCCTGGACCAATCAATTATTTTGAATTTAAACCAGCAAGGCTTGGGCCAAGACCAGATCCTTCTCCCATGATCCAATCTTCCCAAGGTCCATCACTTCTTAAAGACATTGCATTTCCAAGTTCACTGAGTGCTCTTCAAAATGCTTTAAAGCCTGTTATTACAGCATCACCTCAGACTGCACCTCCACCTCCACCTCAGCCGGCATTCTCAAGACCTGTTTCACCATACTCTAGGAGACCAAGCCCTCCACGCTCTGCTGGTCCTGTATTTTCAAGGAGTGTAATTGATAGTCTCAAGAAGACAAATGAGCTACTAAATCAAGAAGTAACAAAGCTGCAAAACCAAGTTAGAAGTTTGAAGCAGAAGTCAGAAGGTCAAGATGCAGAGATTCAGAAATTACGTAAAAATGCCCAAGAAGCTGATTTGTTGGCTCTGGAAGAATCTTCTAAATGCACGGTAGCAAAGGAAGTTGTCAAGTCCATCACAACACAGCTTAAAGAAATGGAAAAGCAGTTACCTCCTGAGGTCTATGACAGTGAAACCTTTAAATCTATGCAAACTCAAATTGAAGCTTTTCTAAATACCAGTGGAACTCAAGCAGCCGAATTTTCATCTTCTTTACCAGCAGACTTGGAATCTGACCAGAAAAATGCCCCTGTTACCAATCCCTTGGGTGTGGAGGATCATGTAAATGCTGCAGGGCTTACAGACCTAACACAGAATGGTGAAAGCTCTGTACAGGACAGCAGTAAATTATCCATTTCAATTACAAGAGATGCTGTGCCTCAACAAAGCACAGAAAATGGCTCAAGATCAGCAGCAAAATATGAAGGAGAACCAGAAAGTACTGAACAATTTGAGCCTGGTGTTTATGTGACTTTCATTGCACTCAAAAATGGTACCAAGATCTTCAAGAGAGTTAGATTCAGCAAACGGAAGTTTGGCGGCCAACAGGCAGAAGAATGGTGGAAGGAAAACAAAGAAAGGCTTCTTAGGAAGTACACCCCACCAGCATCAAGCAGTGCTCCAACTGGGTCATCGGTTCCTCCAGCACCAACAGATGAAAGTAATGAGTTGGCACAATCTTCCCAAACTTAG 3186 0.4325 MADPVSYGNSERDIEQALVTLKKGTQLIKYSRKGKPKFRPFRISTDETTLIWYSHGEERNLKLSSVSRIIPGQRTAVFRRYLRPEKDYLSFSLLYNNGERSLDLICKDKVEAEVWLAGLQALISTGQHRNRRTRSDIPDVRISFQHQYIYAYSRDSSLNWASSDAGSERTNMQLRTSGVDGFRISVSSTPSCSSQGSGPDDIESLGDVYVWGEVWCDGVLPDGSVSPFPIKIDVLTPKSLESNVVLDVHQIACGVRHVALVTRQGEVFTWGEESGGRLGHGIDNDFSRPHLVEFLAVNNVDFVACGEYHTCAVSTSGDLFTWGDGTHNAGLLGHGTEVSHWIPKRVSGPLEGLQVLSVACGTWHSALATSNGKLFTFGDGTFGVLGHGDRESVPYPREVQILSGLKTIKVACGVWHTAAIIEVMSQSGTNISSRKLFTWGDGDKHRLGHGSKETYLLPTCVSALIDYNFHQLACGHTMTVALTTSGHVFTMGGTAYGQLGNPLSDGRLPCLVQDKLVGEFVEEISCGAYHVAVLTSRSEVFTWGRGANGRLGHGDTEDRRSPTFVEALKDRNVKSISCGSNFTASICIHKWVSGADQSVCSGCRQAFGFTRKRHNCYNCGLVHCHACSSKKALKAALAPTPGKPHRVCDPCYAKLKAAEAGDASIFNRKNTVPRRSIDATIRSDRGEVRSARILMSPGPINYFEFKPARLGPRPDPSPMIQSSQGPSLLKDIAFPSSLSALQNALKPVITASPQTAPPPPPQPAFSRPVSPYSRRPSPPRSAGPVFSRSVIDSLKKTNELLNQEVTKLQNQVRSLKQKSEGQDAEIQKLRKNAQEADLLALEESSKCTVAKEVVKSITTQLKEMEKQLPPEVYDSETFKSMQTQIEAFLNTSGTQAAEFSSSLPADLESDQKNAPVTNPLGVEDHVNAAGLTDLTQNGESSVQDSSKLSISITRDAVPQQSTENGSRSAAKYEGEPESTEQFEPGVYVTFIALKNGTKIFKRVRFSKRKFGGQQAEEWWKENKERLLRKYTPPASSSAPTGSSVPPAPTDESNELAQSSQT* 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0823 1061 MobiDBLite consensus disorder prediction 899 916 - -
Vvi5g0823 1061 MobiDBLite consensus disorder prediction 899 921 - -
Vvi5g0823 1061 FunFam PH, RCC1 and FYVE domains-containing protein 1 177 423 - -
Vvi5g0823 1061 SUPERFAMILY RCC1/BLIP-II 205 591 IPR009091 -
Vvi5g0823 1061 ProSiteProfiles BRX domain profile. 976 1031 IPR013591 -
Vvi5g0823 1061 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 434 485 IPR000408 -
Vvi5g0823 1061 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 317 371 IPR000408 -
Vvi5g0823 1061 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 594 656 IPR017455 -
Vvi5g0823 1061 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 206 264 IPR000408 -
Vvi5g0823 1061 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 57 862 - -
Vvi5g0823 1061 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 596 666 IPR013083 -
Vvi5g0823 1061 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 538 589 IPR000408 -
Vvi5g0823 1061 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 486 537 IPR000408 -
Vvi5g0823 1061 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Vvi5g0823 1061 Gene3D - 13 134 IPR011993 -
Vvi5g0823 1061 Pfam FYVE zinc finger 590 656 IPR000306 GO:0046872
Vvi5g0823 1061 MobiDBLite consensus disorder prediction 1029 1061 - -
Vvi5g0823 1061 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 410 420 IPR000408 -
Vvi5g0823 1061 FunFam PH, RCC1 and FYVE domains-containing protein 1 424 595 - -
Vvi5g0823 1061 MobiDBLite consensus disorder prediction 752 778 - -
Vvi5g0823 1061 Gene3D - 328 427 IPR009091 -
Vvi5g0823 1061 Gene3D - 142 327 IPR009091 -
Vvi5g0823 1061 MobiDBLite consensus disorder prediction 933 980 - -
Vvi5g0823 1061 Coils Coil 791 832 - -
Vvi5g0823 1061 PRINTS Chromosome condensation regulator RCC1 signature 267 283 IPR000408 -
Vvi5g0823 1061 PRINTS Chromosome condensation regulator RCC1 signature 317 333 IPR000408 -
Vvi5g0823 1061 PRINTS Chromosome condensation regulator RCC1 signature 374 388 IPR000408 -
Vvi5g0823 1061 PRINTS Chromosome condensation regulator RCC1 signature 533 554 IPR000408 -
Vvi5g0823 1061 PRINTS Chromosome condensation regulator RCC1 signature 475 493 IPR000408 -
Vvi5g0823 1061 PRINTS Chromosome condensation regulator RCC1 signature 358 374 IPR000408 -
Vvi5g0823 1061 SMART fyve_4 588 657 IPR000306 GO:0046872
Vvi5g0823 1061 SUPERFAMILY FYVE/PHD zinc finger 590 657 IPR011011 -
Vvi5g0823 1061 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 265 316 IPR000408 -
Vvi5g0823 1061 CDD PH_PLC_plant-like 12 124 - -
Vvi5g0823 1061 Pfam Transcription factor regulating root and shoot growth via Pin3 976 1030 IPR013591 -
Vvi5g0823 1061 CDD FYVE_like_SF 600 652 - -
Vvi5g0823 1061 Pfam Transcription factor BRX N-terminal domain 842 878 IPR027988 -
Vvi5g0823 1061 SUPERFAMILY PH domain-like 13 123 - -
Vvi5g0823 1061 Gene3D - 428 595 IPR009091 -
Vvi5g0823 1061 MobiDBLite consensus disorder prediction 1033 1061 - -
Vvi5g0823 1061 MobiDBLite consensus disorder prediction 933 968 - -
Vvi5g0823 1061 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 372 423 IPR000408 -
Vvi5g0823 1061 MobiDBLite consensus disorder prediction 750 787 - -
Vvi5g0823 1061 Pfam Regulator of chromosome condensation (RCC1) repeat 316 367 IPR000408 -
Vvi5g0823 1061 Pfam Regulator of chromosome condensation (RCC1) repeat 436 482 IPR000408 -
Vvi5g0823 1061 Pfam Regulator of chromosome condensation (RCC1) repeat 539 585 IPR000408 -
Vvi5g0823 1061 Pfam Regulator of chromosome condensation (RCC1) repeat 371 420 IPR000408 -
Vvi5g0823 1061 Pfam Regulator of chromosome condensation (RCC1) repeat 265 313 IPR000408 -
Vvi5g0823 1061 Pfam Regulator of chromosome condensation (RCC1) repeat 485 534 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0823 Vvi-Chr5 8186969 8196949 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0823 851 1031 Major Intrinsic Protein MIP AT1G31880 25.414 1.39e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0823 - - vvi:100254552 2026.91