Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0813 ATGGTAAGAGCTCCTTGTTGTGATAAGGTGGGATTGAAGAAGGGGCCATGGACGACTCAGGAAGATCAAATTTTGACGGCCTACGTTCTACAACATGGCCATGGAAACTGGCGAGCCCTTCCAAAACAAGCCGGATTACTAAGATGTGGGAAGAGTTGCAGACTCCGATGGATAAACTACTTACGACCTGATATCAAGAGAGGAAATTTCAGCAGAGAAGAAGAGGATACCATCATTGAGTTACATGAAAAGCTTGGCAATAAATGGTCGGCCATAGCAGCCAGCCTCCCGGGTCGGACCGACAACGAGATAAAAAATGTCTGGCACACACACCTGAAAAAGAGGCTCAAAAAAAAATTGGCCACTCCGGATTCCAAAGGCCACTTTACTGCAGCAGCTTCCACATGTGACTCGGATTCTTTTAATTCCTCCGGAAAAATGTCCCCTCAACCGTCCTCCAGTGAATTCTCTTCATTTACAGACTCCTCAACAAGGACCATGGAAACACACAGCACTGGCGTCAAGAATGAACAGATGGAGGAGTACTCAACGGAATCATTTCCTGAAATCGATGAAAGTTTTTGGTCAGACGCGCTGTCCTCTGATAATTCAAGCATGGCGTCAGATTTCCCAGCAGTCGCAGACGAATTACAGCTTCAGACACCGGAACTCGCCTATGGACAAATTTCAAACATGATGGATGATGGCATGGAGTTCTGGTATGACGTTTTCATTAGATCTGGCGGCTTACAGGAGCTTTGA 762 0.4633 MVRAPCCDKVGLKKGPWTTQEDQILTAYVLQHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSREEEDTIIELHEKLGNKWSAIAASLPGRTDNEIKNVWHTHLKKRLKKKLATPDSKGHFTAAASTCDSDSFNSSGKMSPQPSSSEFSSFTDSSTRTMETHSTGVKNEQMEEYSTESFPEIDESFWSDALSSDNSSMASDFPAVADELQLQTPELAYGQISNMMDDGMEFWYDVFIRSGGLQEL* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0813 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vvi5g0813 253 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vvi5g0813 253 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vvi5g0813 253 CDD SANT 16 61 IPR001005 -
Vvi5g0813 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vvi5g0813 253 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vvi5g0813 253 CDD SANT 69 111 IPR001005 -
Vvi5g0813 253 FunFam Myb transcription factor 11 67 - -
Vvi5g0813 253 SMART sant 66 114 IPR001005 -
Vvi5g0813 253 SMART sant 13 63 IPR001005 -
Vvi5g0813 253 Gene3D - 68 133 - -
Vvi5g0813 253 MobiDBLite consensus disorder prediction 135 186 - -
Vvi5g0813 253 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 208 - -
Vvi5g0813 253 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vvi5g0813 253 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vvi5g0813 253 Gene3D - 13 66 - -
Vvi5g0813 253 MobiDBLite consensus disorder prediction 135 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0813 Vvi-Chr5 8046904 8047994 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0813 1 253 MYB Transcription Factor Family AT2G31180 50.584 6.95e-82 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi5g0813 Myb_DNA-binding 3.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0813 K09422 - vvi:100254518 497.278