Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0812 ATGGCGAGAAGTCCTTGTTGTGACAAGATGGGATTAAAGAAGGGGCCATGGACTCCTGAGGAAGATAAAATTCTGGTGGCCCATGTTCAAAAACATGGCCATGGAAATTGGCGAGCCCTTCCAAAACAAGCCGGATTACTGAGATGTGGGAAGAGTTGCAGGCTCCGATGGGTGAACTACTTACGACCCGATATCAAGAGAGGAAATTTCAGCAGAGAAGAAGAGGATGCCATCATTGACTTACATGAAAAGCTTGGCAATAGATGGTCTGCCATTGCAGCGAGATTACCGGGTCGGACTGACAATGAGATAAAGAATGTGTGGCACACCAACTTGAAGAAGAGGCTCAAAAAAAAATTGGCCACTCCTAATTCTAAAGGCCACTCTACTGCAGCAGCGTCCAAATGTGACTCGGGTTCTGCATGCCAGTCCGAACCAGTCAATTTAAATTTTCCAGGAAAAATATCCCCACAACCATCTTCCAGTGAATTCTCTTCAATTACAGACTCCCCAATAAGGAACATGGAGATACACATGAACACTGGCATCAAGGATGAACAGATGGACTCACTGGAATCATTTCCTGAAATTCATGAAAGTTTTTGGTCAGATGCACTGTCCTCTGATAATTCAAGCATGCCAACGGCTTTCCATACCGTCAACGACGAATCACAGCTTCAATTTCCATTATCTCCAGCCGATGCCCTGGAAGTTGGGTATGGACACAGTTCCAGAATTGATGACGGCATGGAGTTTTGGTATGACGTTTTCATCAGAGCTGGAGGCTTACAAGAGCTTAATTGA 804 0.4502 MARSPCCDKMGLKKGPWTPEEDKILVAHVQKHGHGNWRALPKQAGLLRCGKSCRLRWVNYLRPDIKRGNFSREEEDAIIDLHEKLGNRWSAIAARLPGRTDNEIKNVWHTNLKKRLKKKLATPNSKGHSTAAASKCDSGSACQSEPVNLNFPGKISPQPSSSEFSSITDSPIRNMEIHMNTGIKDEQMDSLESFPEIHESFWSDALSSDNSSMPTAFHTVNDESQLQFPLSPADALEVGYGHSSRIDDGMEFWYDVFIRAGGLQELN* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0812 267 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vvi5g0812 267 CDD SANT 16 61 IPR001005 -
Vvi5g0812 267 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 213 - -
Vvi5g0812 267 FunFam Transcription factor MYB15 68 140 - -
Vvi5g0812 267 SMART sant 13 63 IPR001005 -
Vvi5g0812 267 SMART sant 66 114 IPR001005 -
Vvi5g0812 267 MobiDBLite consensus disorder prediction 116 139 - -
Vvi5g0812 267 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Vvi5g0812 267 FunFam MYB-related transcription factor 13 66 - -
Vvi5g0812 267 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vvi5g0812 267 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vvi5g0812 267 Gene3D - 69 137 - -
Vvi5g0812 267 CDD SANT 69 111 IPR001005 -
Vvi5g0812 267 Gene3D - 13 66 - -
Vvi5g0812 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vvi5g0812 267 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vvi5g0812 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vvi5g0812 267 MobiDBLite consensus disorder prediction 123 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0812 Vvi-Chr5 8035805 8037159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0812 1 266 MYB Transcription Factor Family AT2G31180 49.071 1.85e-80 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi5g0812 Myb_DNA-binding 9.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0812 K09422 - vvi:100240829 549.28