Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0806 ATGAGCGAAGCATTGAGGAGAGACTACCAGGTGTGCGAAGAGATCGGCCGGGGGCGATTCGGAACTGTTTTCCGGTGCATCTCGGTGGAGTCCGGCGACTCTTTCGCTTGCAAATCCATCGATAAAATCATCCTTGCCGACGATTCCATCGACCGCCAATGCATCGAGGGGGAGGCGAAGATTATGCATCTTGTCTCCGGTCACTCTAACGTTGTTCAGATCTTCGACGTCTACGAAGACGACACTCACCTCGACATCATTCTCGAGCTCTGTAGCTCCTCCGATCTCTTCGATCGTATTGCCGACCGAGTCTTTTCCGAGGCAGAGGCGGCCGCTGTGATGAAGCCGCTGATGGAAGCGGTGGCTCACTGTCACCGACGAGGCGTGGCTCACCGGGACATTAAGCCGGATAATATCTTTTTTGATGAGTGGAATCGTTTGAAACTTGGGGATTTTGGCTCGGCCGAGTGCTTTAGGGAGGGCGAGTTGATGAGCGGAATCGTCGGGACGCCGTACTATGTGGCGCCGGAGGTAATCGCCGGAAGGGAGTACAGTGAGAAGGTTGATGTTTGGAGTGCGGGGGTGATTTTGTACATAATGCTGGCCGGTATCCCTCCTTTTTACGGCGAGTCTTCGATGGAGATTTTCGAGGCGGTGCTTCGCGCGAATCTCCGGTTCCCGGCGAGAATATTTCACTCGGTATCAACGGCAGCAAAGGATCTCTTGAGGAGGATGATCTGTAAGGACGTTTCAAGGCGTTTCACGGCAGAACAAGTTCTAAGACATCCATGGATGACAAGCGTTGGTGAGACAAGAACAGAGGCAGATCTAACTTGA 837 0.5317 MSEALRRDYQVCEEIGRGRFGTVFRCISVESGDSFACKSIDKIILADDSIDRQCIEGEAKIMHLVSGHSNVVQIFDVYEDDTHLDIILELCSSSDLFDRIADRVFSEAEAAAVMKPLMEAVAHCHRRGVAHRDIKPDNIFFDEWNRLKLGDFGSAECFREGELMSGIVGTPYYVAPEVIAGREYSEKVDVWSAGVILYIMLAGIPPFYGESSMEIFEAVLRANLRFPARIFHSVSTAAKDLLRRMICKDVSRRFTAEQVLRHPWMTSVGETRTEADLT* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0806 278 Pfam Protein kinase domain 9 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0806 278 ProSiteProfiles Protein kinase domain profile. 9 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0806 278 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Vvi5g0806 278 PIRSF ILK 2 262 - -
Vvi5g0806 278 FunFam Phosphoenolpyruvate carboxylase kinase 2 1 276 - -
Vvi5g0806 278 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vvi5g0806 278 SUPERFAMILY Protein kinase-like (PK-like) 5 269 IPR011009 -
Vvi5g0806 278 CDD STKc_CAMK 8 264 - -
Vvi5g0806 278 SMART serkin_6 9 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g0806 278 FunFam Phosphoenolpyruvate carboxylase kinase 1 1 92 - -
Vvi5g0806 278 Gene3D Transferase(Phosphotransferase) domain 1 97 277 - -
Vvi5g0806 278 PANTHER SERINE/THREONINE-PROTEIN KINASE 5 268 - -
Vvi5g0806 278 Gene3D Phosphorylase Kinase; domain 1 11 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0806 Vvi-Chr5 7967629 7969019 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0806 2 264 EF-hand Containing Proteins AT2G38910 44.569 9.44e-76 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vvi5g0806 Pkinase 7.3e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0806 - K08794 vvi:100252772 560.066