Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0801 ATGGAACCTGCCGTTCTTGACGATATTATCGAAAGGTTACTTGCCGTCAAAGCCAGGCCAGGGAAGCAAGTGCAGCTTTCTGAGGCCGAGATCAGGCAGCTTTGTGTTGCTTCCAAGGATATTTTCCTGAGACAGCCCAATCTATTGGAGCTCCAAGCCCCCGTCAAGATCTGCGGGGACATTCATGGTCAGTATTCGGATCTTCTAAGGCTTTTTGACTATGGTGGACTGCCGCCTGAATCCAATTACTTGTTCTTAGGGGACTATGTAGATCGAGGAAAGCAAAGCCTGGAAACTATATGCCTTCTGCTTGCATATAAAATAAGATACCCTGAGAACTTTTTCCTATTGAGGGGCAACCATGAATGTGCTTCTATAAACCGTATCTATGGATTTTATGACGAGTGTAAGAGAAGATTCAATGTCAGATTGTGGAAAGTGTTCACAGATTGTTTCAATTGCCTACCTGTGGCTGCTCTCATTGATGAAAAGATACTCTGCATGCATGGTGGGCTTTCCCCTGATCTGCGGAGTTTAGATCAAATAAGGAATTTGCAGCGGCCTACTGATGTTCCAGATGCTGGTTTGCTATGCGATCTTCTCTGGTCTGATCCTAGTAATGATGTTCGAGGTTGGGGGATGAATGATAGAGGCGTTTCTTATGTCTTTGGCCCTGATAAGGTGACAGAGCTTCTTCAGAAGCATGATCTGGACCTTATTTGTCGTGCCCACCAGGTTGTGGAAGATGGATACGAGTTTTTTGCTAATAGACAACTTGTAACCATATTTTCAGCACCTAATTACTGTGGTGAGTTTGATAATGCGGGTGCCATGATGAGTGTGGATGACACTCTCATGTGTTCTTTCCAAGTATTAAAACCTGCAGAAAAGAATAAAAAATTTAGCTTTGGAAGCACTACTACAGCTAAGCCTGGCAGCTGTCCTGCAAGACTCAAGGTTTTATCATTCTTCTTTGCCAAGGGGAAGCTTCTCCTGTCAAGCTGTCCAATGTGA 1014 0.4418 MEPAVLDDIIERLLAVKARPGKQVQLSEAEIRQLCVASKDIFLRQPNLLELQAPVKICGDIHGQYSDLLRLFDYGGLPPESNYLFLGDYVDRGKQSLETICLLLAYKIRYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKVFTDCFNCLPVAALIDEKILCMHGGLSPDLRSLDQIRNLQRPTDVPDAGLLCDLLWSDPSNDVRGWGMNDRGVSYVFGPDKVTELLQKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDDTLMCSFQVLKPAEKNKKFSFGSTTTAKPGSCPARLKVLSFFFAKGKLLLSSCPM* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0801 337 SUPERFAMILY Metallo-dependent phosphatases 17 298 IPR029052 -
Vvi5g0801 337 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Vvi5g0801 337 Gene3D - 2 305 IPR029052 -
Vvi5g0801 337 Pfam Calcineurin-like phosphoesterase 54 246 IPR004843 GO:0016787
Vvi5g0801 337 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Vvi5g0801 337 SMART pp2a_7 26 296 IPR006186 GO:0016787
Vvi5g0801 337 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Vvi5g0801 337 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Vvi5g0801 337 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Vvi5g0801 337 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Vvi5g0801 337 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Vvi5g0801 337 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Vvi5g0801 337 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Vvi5g0801 337 CDD MPP_PP1_PPKL 5 294 - -
Vvi5g0801 337 FunFam Serine/threonine-protein phosphatase 51 305 - -
Vvi5g0801 337 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 10 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0801 Vvi-Chr5 7894022 7898437 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0801 55 239 Calmodulin-binding Proteins AT5G63870 33.636 4.92e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0801 K06269 - vvi:100240794 660.603