Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0769 ATGACTTCTTTCTCTCTCATCAATTCCCTGAATTCCGATTCCGATTTCAATTTGTTATCGGATTCTTTTTCCTGGGAAAACTCCCTACCTTTCAATGAAAACGACTCCCAGGAGATGCTCCTCCTGGGCATGCTGGCCAGCTCCACTCAGGAAACCTCAGAAACAGTTTCTTTGAATCGAGTGAAGGAGGAAGAAGTGACTTCCCAGGAAAATCCCGAGAAGGAGAAGTCATACAGAGGCGTTAGGAGGCGGCCATGGGGGAAATTCGCAGCAGAAATAAGGGACTCGACCAGGCATGGCATAAGGGTGTGGCTGGGAACATTTGACAGTGCAGAGGCAGCTGCTCTGGCCTATGATCAAGCTGCTTTTGCGATGCGGGGCCCTGCGGCAGTCCTCAATTTCCCGGTGGAAAGAGTGAAGGAATCGATGCAGGAGATCAAGTGCATCTTGGAGGAGGGGGGCTCACCAGTGGTGGCCCTCAAGAAGAGGCACTCTATGCGGAGAAAAAGTCCTTGCAAGAAACATAAAAGTGAAGAGGTGAGGTTAGAAAATGTGGTAGTGCTGGAGGATTTGGGTACTGAATACTTGGAACAGCTCCTCACTTTCTCTGAGACCTCTAGTCCTTGA 627 0.4976 MTSFSLINSLNSDSDFNLLSDSFSWENSLPFNENDSQEMLLLGMLASSTQETSETVSLNRVKEEEVTSQENPEKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFAMRGPAAVLNFPVERVKESMQEIKCILEEGGSPVVALKKRHSMRRKSPCKKHKSEEVRLENVVVLEDLGTEYLEQLLTFSETSSP* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0769 208 MobiDBLite consensus disorder prediction 53 79 - -
Vvi5g0769 208 Pfam AP2 domain 77 127 IPR001471 GO:0003700|GO:0006355
Vvi5g0769 208 PRINTS Ethylene responsive element binding protein signature 101 117 IPR001471 GO:0003700|GO:0006355
Vvi5g0769 208 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Vvi5g0769 208 SUPERFAMILY DNA-binding domain 77 137 IPR016177 GO:0003677
Vvi5g0769 208 CDD AP2 76 136 IPR001471 GO:0003700|GO:0006355
Vvi5g0769 208 PANTHER DNA-BINDING DOMAIN 52 201 IPR044808 GO:0003700|GO:0009873
Vvi5g0769 208 MobiDBLite consensus disorder prediction 57 79 - -
Vvi5g0769 208 FunFam Ethylene-responsive transcription factor 2 76 137 - -
Vvi5g0769 208 Gene3D AP2/ERF domain 76 137 IPR036955 GO:0003700|GO:0006355
Vvi5g0769 208 ProSiteProfiles AP2/ERF domain profile. 77 135 IPR001471 GO:0003700|GO:0006355
Vvi5g0769 208 SMART rav1_2 77 141 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0769 Vvi-Chr5 7569272 7569898 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0769 29 206 AP2-EREBP Transcription Factor Family AT3G23240 62.295 9.70e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi5g0769 AP2 4.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0769 K14516 - vvi:100261423 374.4