Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0768 ATGGAAGATCATTCGAAAGGGAATGAGAAGCAGGAGCAGGAAGGGAAGGAAAAGGAAGAAGTTCGATACCGAGGGGTGAGGAGGAGGCCATGGGGGAAGTTTGCAGCCGAGATTAGGGATCCGTCTAGGCAAGGTGCTCGTCTATGGCTAGGCACATTTGACAGGGCGGAGGATGCAGCTCGCGCCTATGATCGAGCGGCCTTTAACTTAAGGGGTCATCTTGCCATTCTTAACTTTCCTAATGAGTACTATTCTGAAATCATGGGCTCCCATCGCCCCCCACCATCACCATCCTCATCGTCTTCCTCGTCATCTTCTGGGCCTTGTAGGAGTTTAGAGATGGGAGGTTCCTCTTCTGGGCAAGAAAAGCAAGTCATTGAGTTCGAGTGTTTGGATGACACGGTGTTGGAAGAGCTTCTTGGATCAGAAGATGAGAAGAAGAAAGGCGCCAAAAATTGA 459 0.5011 MEDHSKGNEKQEQEGKEKEEVRYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFDRAEDAARAYDRAAFNLRGHLAILNFPNEYYSEIMGSHRPPPSPSSSSSSSSSGPCRSLEMGGSSSGQEKQVIEFECLDDTVLEELLGSEDEKKKGAKN* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0768 152 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Vvi5g0768 152 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Vvi5g0768 152 PANTHER DNA-BINDING DOMAIN 9 141 IPR044808 GO:0003700|GO:0009873
Vvi5g0768 152 FunFam Ethylene-responsive transcription factor 2 21 81 - -
Vvi5g0768 152 SMART rav1_2 22 86 IPR001471 GO:0003700|GO:0006355
Vvi5g0768 152 Pfam AP2 domain 22 73 IPR001471 GO:0003700|GO:0006355
Vvi5g0768 152 CDD AP2 22 81 IPR001471 GO:0003700|GO:0006355
Vvi5g0768 152 ProSiteProfiles AP2/ERF domain profile. 22 80 IPR001471 GO:0003700|GO:0006355
Vvi5g0768 152 Gene3D AP2/ERF domain 21 81 IPR036955 GO:0003700|GO:0006355
Vvi5g0768 152 MobiDBLite consensus disorder prediction 92 124 - -
Vvi5g0768 152 SUPERFAMILY DNA-binding domain 22 81 IPR016177 GO:0003677
Vvi5g0768 152 MobiDBLite consensus disorder prediction 85 124 - -
Vvi5g0768 152 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0768 Vvi-Chr5 7549865 7550323 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0768 17 147 AP2-EREBP Transcription Factor Family AT3G23230 64.885 3.10e-49 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi5g0768 AP2 7.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0768 - - vvi:100244290 258.455