Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0767 ATGGATGAAGACCCTGAGGCCAAGATGAAGGAACAGAAAGAAGGCGGAGGAGAGGTTCGGTATCGAGGCGTTCGGAGGCGGCCATGGGGGAAGTTTGCTGCGGAGATACGTGACTCGACTAGGCATGGAGCGCGCGTCTGGCTCGGGACTTTCAATTCTGCGGAGGAGGCTGCAAGAGCATATGACCGAGCTGCTTATGCCATGAGGGGTTCCTTGGCGATTCTCAACTTCCCTAATGAGTATCATACACCCGGCACGGCTAGCTCTTCAGCTTCATCCTCAATGCCCGAAGGTGATCAGCAGGGAAAACAAGTCATTGAATTGGAGTACTTGGATGATAAGCTGCTAGAGGATCTTCTCGACTCTGAAGACAAAAAGAACAAGAAAACCTGA 393 0.5191 MDEDPEAKMKEQKEGGGEVRYRGVRRRPWGKFAAEIRDSTRHGARVWLGTFNSAEEAARAYDRAAYAMRGSLAILNFPNEYHTPGTASSSASSSMPEGDQQGKQVIELEYLDDKLLEDLLDSEDKKNKKT* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0767 130 MobiDBLite consensus disorder prediction 1 21 - -
Vvi5g0767 130 ProSiteProfiles AP2/ERF domain profile. 20 78 IPR001471 GO:0003700|GO:0006355
Vvi5g0767 130 Pfam AP2 domain 20 70 IPR001471 GO:0003700|GO:0006355
Vvi5g0767 130 SMART rav1_2 20 84 IPR001471 GO:0003700|GO:0006355
Vvi5g0767 130 Gene3D AP2/ERF domain 19 79 IPR036955 GO:0003700|GO:0006355
Vvi5g0767 130 MobiDBLite consensus disorder prediction 81 100 - -
Vvi5g0767 130 CDD AP2 20 79 IPR001471 GO:0003700|GO:0006355
Vvi5g0767 130 FunFam Ethylene-responsive transcription factor 2 19 79 - -
Vvi5g0767 130 SUPERFAMILY DNA-binding domain 20 79 IPR016177 GO:0003677
Vvi5g0767 130 PANTHER DNA-BINDING DOMAIN 11 121 IPR044808 GO:0003700|GO:0009873
Vvi5g0767 130 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Vvi5g0767 130 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Vvi5g0767 130 MobiDBLite consensus disorder prediction 78 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0767 Vvi-Chr5 7542707 7543099 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0767 18 126 AP2-EREBP Transcription Factor Family AT3G23230 62.295 1.61e-43 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi5g0767 AP2 9.5e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0767 - - vvi:100251140 201.83