Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0766 ATGTGGACATGCAAAAGAAACCACATGACCAACGGTGGACTGCTGGCCTATCCTAGAAAGTTCCTTTTTTTATTTTTTATTTTTTTGAACCAGCCCATTAGTTTCGCCTCTCTCATGGATCTTGTGAGCACAGACTCCTCCATCCATGGATCACAAGCCTTTTCTCCCATCAAAAGCCAGGCGAGCTCAGTGCTTCCTTCTCCCTCTCATTCCTCGGACACCAGTTTCCCCATTATAGCCATTGCCGTAATAGGAATCCTGGCCACTGCTTTCTTGCTGGTGAGCTACTACATCTTTGTAATCAAATGCTGCCTCAATTGGCACCGGATTGATCTGCTGAGACGATTTTCTTTCTCAAGGAGTCGGCACCCGGAAGACCCTTTAATGGTGTACTCCCCAGCAATCGAGAGTCGAGGCCTGGACGAGTCAGTCATCAGATCAATCCCAATATTCCAGTTCAGGAAAGGAGGTGGCAGAGAGTTTGGAGAAAGAAGCCATTGCGAGTGTGCGGTTTGCTTGAATGAGTTTCAAGAAGAAGAGAAGCTAAGAATCATACCAAACTGCAGTCACATATTTCATATAGATTGCATAGACGTGTGGCTTCAAAGCAATGCTAATTGCCCACTTTGCAGAACAAGCATTTCAACCACACCCCGGTTTCCTGTTCACCAAATCATTGCTCCTAGCTCTTCCCCCCAAGATCCAAGCCCCTACGCCAATAATTACATAGGAGGGGATGAAGATTTTGTAGTAATTGAATTGGGAAATGATAGTTCTGCTGATTCATCACTGCTTAGGCCACCAGAAAGACTGAATTCCAGAGAGTTATCTGCGCCATCAATTAGTCCATCACCTAGGAAGCTAGAGCAGAGAATTGTGCCTAAAAAGGCAAGGAAGTTTCATCATGTTGCAAGCATGGGTGATGAGTGCATTGACACTAGAGGCAAAGATGATCAGTTCTCAATCCAACCCATCAGGAGGTCTTTTTCAATGGACTCATCCAACGACAGGCAGCTGTATTTAGCAATTCAAGAGATTTTGCAACAGAACAGGCCTGTCAGTGACTTCAGCCCTAGTGAAGGTTGCAGCAGCAGATTCCGAAGATCATTCTTTTCTTTTGGCCATGGAAGGGGATCCAGAAGTGCAGTCCTGCCAATTCCTATGGACCCATAG 1173 0.4569 MWTCKRNHMTNGGLLAYPRKFLFLFFIFLNQPISFASLMDLVSTDSSIHGSQAFSPIKSQASSVLPSPSHSSDTSFPIIAIAVIGILATAFLLVSYYIFVIKCCLNWHRIDLLRRFSFSRSRHPEDPLMVYSPAIESRGLDESVIRSIPIFQFRKGGGREFGERSHCECAVCLNEFQEEEKLRIIPNCSHIFHIDCIDVWLQSNANCPLCRTSISTTPRFPVHQIIAPSSSPQDPSPYANNYIGGDEDFVVIELGNDSSADSSLLRPPERLNSRELSAPSISPSPRKLEQRIVPKKARKFHHVASMGDECIDTRGKDDQFSIQPIRRSFSMDSSNDRQLYLAIQEILQQNRPVSDFSPSEGCSSRFRRSFFSFGHGRGSRSAVLPIPMDP* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0766 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 217 IPR013083 -
Vvi5g0766 390 SMART ring_2 169 210 IPR001841 -
Vvi5g0766 390 Pfam Ring finger domain 168 211 IPR001841 -
Vvi5g0766 390 SUPERFAMILY RING/U-box 168 217 - -
Vvi5g0766 390 ProSiteProfiles Zinc finger RING-type profile. 169 211 IPR001841 -
Vvi5g0766 390 FunFam E3 ubiquitin-protein ligase ATL6 130 217 - -
Vvi5g0766 390 MobiDBLite consensus disorder prediction 259 287 - -
Vvi5g0766 390 PANTHER RING-H2 FINGER PROTEIN ATL16 56 386 IPR044600 GO:0016567|GO:0016740
Vvi5g0766 390 CDD RING-H2_EL5-like 168 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0766 Vvi-Chr5 7527982 7529676 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0766 69 390 C3H Transcription Factor Family AT1G04360 55.114 4.12e-114 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0766 - - vvi:100249451 665.996