Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0764 ATGGATTCCTTCGACGATGATACTTGGGATTTTCTTAATCATAAATTGATAGACGACGTCACATCCAACGATCTCTCTTGGATAAACGACGGTGCTGGTGTCGATATTGATCTTTCGCGTATTTGTGCTGCGTCGCAAGAAAATGAAGGCAGACAGAAGAGGGGACGCAATGATTCATCCACCAGGCCTGGAACCAAAGCTTGCCGTGAGAAATTGCGAAGGGAAAGATTGAATGACAGGTTTCTAGACTTGAGTTCCATTTTAGAACCTGGTAAATCTGCCAAAACTGACAAATTGGCCATACTTGGGGATGCCATCCGAGTACTGAACCAGCTGAGAAATGAAGCTAAGGATCTTGAAGATGCAAATGAAAAGCTACAAGAAGAGATAAGAAGTTTAAAGGCAGAGAAGAATGAACTTCGTGAAGAGAAACTCTTGCTAAAGGCGGATAAAGAAAGGATAGAGCAGCAGATGAAAGCAATTTCTGCTCCAGCTGCAGGGTTTTGGCCTACCTACCCTGCAGCAACACATCATACTGGGGCAAATAAGTCGGCTGTTTTCCCGAGCTATGGCTTGTTTCCAATGTGGCAATATATACCTTCATCTGCTCTTGATACTTCCCATGATCATGAGCTGAGGCCACCTGCAGCATAG 654 0.4434 MDSFDDDTWDFLNHKLIDDVTSNDLSWINDGAGVDIDLSRICAASQENEGRQKRGRNDSSTRPGTKACREKLRRERLNDRFLDLSSILEPGKSAKTDKLAILGDAIRVLNQLRNEAKDLEDANEKLQEEIRSLKAEKNELREEKLLLKADKERIEQQMKAISAPAAGFWPTYPAATHHTGANKSAVFPSYGLFPMWQYIPSSALDTSHDHELRPPAA* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0764 217 Coils Coil 102 157 - -
Vvi5g0764 217 PANTHER BHLH TRANSCRIPTION FACTOR 7 217 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Vvi5g0764 217 MobiDBLite consensus disorder prediction 47 68 - -
Vvi5g0764 217 MobiDBLite consensus disorder prediction 46 68 - -
Vvi5g0764 217 Gene3D - 65 145 IPR036638 GO:0046983
Vvi5g0764 217 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 61 112 IPR011598 GO:0046983
Vvi5g0764 217 FunFam Transcription factor bHLH104 64 145 - -
Vvi5g0764 217 SMART finulus 67 118 IPR011598 GO:0046983
Vvi5g0764 217 CDD bHLH_AtILR3_like 66 141 - -
Vvi5g0764 217 Pfam Helix-loop-helix DNA-binding domain 64 112 IPR011598 GO:0046983
Vvi5g0764 217 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 55 129 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0764 Vvi-Chr5 7500309 7506683 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0764 52 217 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 67.066 9.79e-76 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi5g0764 HLH 3.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0764 - - vvi:100264856 417.157