Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g0735 ATGGATTGCAATGCATCCGAAGACGATGGCAACATCCGAAAGATTAGATCTGTTTCAGGGTTCGATTCGCTCGAATCCGATAGCCTTCATGCGTTTCGGCAATGCAACAACGACCCAGATGCCGCCCTAAATTTCGACCGTGATGCCCCTCCGGTAACGGTTAAACGGACCATTACAAGTACTGGAGCCAGGATTCTTACTCAGATTAAGCAAGAGAAGTCTGACGAAGTGGAAGGAGCGGAGTTCCTTCATGGGTTGAAAACGAAGATCAAAGTAAAAGAAGAACCCGATTTGAATGTTGACGGGATTTTTGAAAAGGAGGTGGGTTCAAACCCGCCCCAGGTGGATCGGACTTGGGCGTTGGTGCCTCATAAGGAAATCATGAAAATGTCCTTTGATGAGTTCCTTCGAGCTACGGATGCCCACGTTGAACGAAAGGACCTTGAACGATCAGAAGAGGCTCAAGGGCATCATGGGTTGAAGGACAAGATCAAAGTAAAGGAAGAGCTTGATGTGGGGTTACTCGGCTCAGATAGCATTCGATCATTGGTCAAAAGACCGCCTGATGGATTTCTCGAATCCTATGATGATTTTGTCAAGCCAAAACGTACCAAAGATGAACATCGCAAAGAAAACTCACAATGGCATCCTGGGTTAAAGGAGAAGATCCAAATAAAGGAAGAACTTGATGCGACGTTACTGGGTACAGATTCTGCCAGAAATGAGAACTCAGGAATGCGGGGTGATAGCTTTGTCCAATCAAGGAACGGAAAAGTTATATCTGATGGCAACGGCCGCAATACTCAAAGTGTTCCTTATCACAATCCTCAGAAACCCTTTAATGTGAAGAAAGAGACAGCTCAATTTCTTCCTTATGGCAATCCTCAGAAAAACTTCAATGTGAAGCAAGGGAAAATTGAGGATAGACCAGTTACTTCTGTTTTGGTGGAGGATGGGGATTTTCCAGAAGAACCAGATTGGTTTTTGGTGGGGAGGACCCCCATTATAGGTCTTTCCACCACCAAAGGGAGGAAATTGGTAGACAATGAGATAGTCCATTTTTCTTTTCCTTCTGCTGATTTGAGAAATAAATGTAACTCAAAATGGGTTGCGAAGGCTGCTTCTGCAGCGTCTGCTATAGTTCGCTTCTCAACCAAACGTTCTGGAGAGATTGGTAGGCTGCCAATGGAGTGGACAAAGTGCATTATTCCACTGGTAAATTCTTCAAAGGTTAAGGTACTTGGTCGATGTGTAGCTGCACCAATAATTCTTCGATTGATGCAGGAAATAGTGTTGTATGTTAGCTTTTATATTCACCAGTCAGTCTTCACTGAGGGGAATAAGTCTTCATGGAGGCTAGATGCGGCCCCAAACATTGACTCCACAGTTTACCCTCTGCCAACTCTGTTCAAACTGCTGCAAATTAAACCATTTCAGGAGGCTGAATTCACCCCAGAGGAACTTGATTCAAGGAAACGTAAACTAAATCTAGAGGGTGATACAGATGAAGCTCCATCAATGTTGCCTATAGTGAAACAAAAAAAGGGTTGCCAACAGTATCCTGAACAAAACAATGATGAACAGGCTCTCTCAGAATCATCTCTAAATAAGCTTGTTGGGGCTGCAGATCAATATAACTTGGAGGAGATGGAGTCCCCAAGTACACTCATGTGTGATTTAAGGCCCTATCAGAAACAAGCTCTCTACTGGATGTCTGAATTGGAGAAGGGAAGTGATGCTGAGCAAGCACCAAAAACTCTTCACCCATGCTGGGCTGCCTATCAAATATGTGATGAGAGGGCTTCTGCAATCTATGTGAACATCTTCTCAGGAGAAGCAACTACACAACTACCCACAGCAATACATATGGCAAGAGGAGGAATTTTAGCAGATGCAATGGGGCTAGGGAAGACTGTGATGACAATTGCCCTAATACTGGCAAGACCAGGCAGGAGAAGCTCTGGTGTCCATAAACTCCTCACTGAAGCTGCAGATGATACTGAAGAAGCAGAGAAAAATACTGACTCTCACACAAAGGCCCCATTAAACGTAAAAGGCGGAACTCTTATTGTTTGTCCCATGGCCTTGTTAAGTCAGTGGAAGGATGAGCTGGAAACACATTCAAAGCCAGAAAGTATTTCTATTTTTATCCATTATGGTGGAGACAGAACCAATGACCCAAAGGTGATATCAGAACATGATGTGGTCTTGACAACATACGGTGTCTTAACTTCAGCTTATAAGAATGATGAAAATAGCAGCATTTTCCACAGAGTTGAGTGGTATAGGGTGGTGTTAGATGAAGCCCACACTATTAAATCCTCAAAGACCCTCAGTGCTCAGGCTGCTTTTGCATTACCTTCGCATTGCAGGTGGTGCCTGACGGGTACTCCCCTTCAGAATAATTTGGAAGATCTCTACAGCCTCCTATGCTTCTTGCATGTTGAGCCATGGTGTAACTGGGCTTGGTGGTACAAATTGATCCAAAAGCCTTATGAGTGTGGTGATCAGAGAGGGTTGAGGTTAATTAAAGCTATTTTGAGACCGCTGATGCTGAGGAGAACAAAGGACACAAAGGATAAAGAAGGAAGGCCCATACTCGTTCTTCCTCCAACTGACATTCAAGTCATCGAGTGTGAACAATCAGAAGCTGAACATGATTTTTATGATGCCCTTTTCAAGAGATCTAAAGTTCGGTTTGATCAATTTGTTGAACAAGGCAGAGTTCTTCACAACTATGCGTCTATCCTTGAGCTACTACTTCGACTGAGGCAATGCTGCAACCACCCATTTCTTGTTATGAGCCGAGGTGATACACAACAGTATGCAGACTTGAGTAAGCTTGCAAGAAAGTTCCTTGAAAACAATCCTTGCTCTGACACTTCAAATCACTCCATTCCTACCCGGGCATTTGTTGAAGAGGTCGTTGGGGGAATTAGACGGGGTGAAAATACAGAGTGCCCTATATGCCTAGAGTCTGCAGATGACCCAGTGCTCACACCATGTGCACATCTGATGTGCAGGGAATGCCTACTTTCAAGCTGGAGGACCCCCTTGAGTGGGCTATGCCCAATATGTCGGAAACTGCTAAAAAAAACAGATCTCATAACATGCCCATCAGAAAACCGATTTAGAATTGATGTTGAGAAGAACTGGAAGGAGTCTTCAAAGATCTCTGAACTTTTACATTGCTTGGAGCGTATTTCCCAGTCAAGAATTGGTGAGAAGAGCATTGTGTTTAGCCAATGGACTTCATTTTTAGATCTCTTGGAGATCCCATTGAGAAGGAGAGGAATCGGATTCTTAAGGTATGATGGAAAAGTGGTTCAGAAACAGAGGGAGAGGATTTTGAAGGAGTTCAGTGAGACTGAAGAGAAAACGGTATTGCTAATGTCACTGAAAGCCGGTGGTGTCGGCTTAAATCTAACAGCAGCCTCCAATGTATTCCTAATGGATCCCTGGTGGAACCCTGCAGTAGAGGAGCAAGCGATAATGCGAATTCACCGCATTGGACAAGAGCGAACAGTTCGTGTCAGAAGATTTATTGTGAAGGACACGGTGGAGGAACGGATGCAGCAAGTGCAAGCAAGGAAACAGCGCATGATCACCGGAGCCCTCACCGATGAGGAAGTTCGAACTGCCAGGATTGAGGAGCTCAAAATGCTGTTCAGATGA 3675 0.4438 MDCNASEDDGNIRKIRSVSGFDSLESDSLHAFRQCNNDPDAALNFDRDAPPVTVKRTITSTGARILTQIKQEKSDEVEGAEFLHGLKTKIKVKEEPDLNVDGIFEKEVGSNPPQVDRTWALVPHKEIMKMSFDEFLRATDAHVERKDLERSEEAQGHHGLKDKIKVKEELDVGLLGSDSIRSLVKRPPDGFLESYDDFVKPKRTKDEHRKENSQWHPGLKEKIQIKEELDATLLGTDSARNENSGMRGDSFVQSRNGKVISDGNGRNTQSVPYHNPQKPFNVKKETAQFLPYGNPQKNFNVKQGKIEDRPVTSVLVEDGDFPEEPDWFLVGRTPIIGLSTTKGRKLVDNEIVHFSFPSADLRNKCNSKWVAKAASAASAIVRFSTKRSGEIGRLPMEWTKCIIPLVNSSKVKVLGRCVAAPIILRLMQEIVLYVSFYIHQSVFTEGNKSSWRLDAAPNIDSTVYPLPTLFKLLQIKPFQEAEFTPEELDSRKRKLNLEGDTDEAPSMLPIVKQKKGCQQYPEQNNDEQALSESSLNKLVGAADQYNLEEMESPSTLMCDLRPYQKQALYWMSELEKGSDAEQAPKTLHPCWAAYQICDERASAIYVNIFSGEATTQLPTAIHMARGGILADAMGLGKTVMTIALILARPGRRSSGVHKLLTEAADDTEEAEKNTDSHTKAPLNVKGGTLIVCPMALLSQWKDELETHSKPESISIFIHYGGDRTNDPKVISEHDVVLTTYGVLTSAYKNDENSSIFHRVEWYRVVLDEAHTIKSSKTLSAQAAFALPSHCRWCLTGTPLQNNLEDLYSLLCFLHVEPWCNWAWWYKLIQKPYECGDQRGLRLIKAILRPLMLRRTKDTKDKEGRPILVLPPTDIQVIECEQSEAEHDFYDALFKRSKVRFDQFVEQGRVLHNYASILELLLRLRQCCNHPFLVMSRGDTQQYADLSKLARKFLENNPCSDTSNHSIPTRAFVEEVVGGIRRGENTECPICLESADDPVLTPCAHLMCRECLLSSWRTPLSGLCPICRKLLKKTDLITCPSENRFRIDVEKNWKESSKISELLHCLERISQSRIGEKSIVFSQWTSFLDLLEIPLRRRGIGFLRYDGKVVQKQRERILKEFSETEEKTVLLMSLKAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQERTVRVRRFIVKDTVEERMQQVQARKQRMITGALTDEEVRTARIEELKMLFR* 1225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g0735 1224 Gene3D - 612 855 IPR038718 -
Vvi5g0735 1224 SMART ring_2 987 1026 IPR001841 -
Vvi5g0735 1224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 960 1050 IPR013083 -
Vvi5g0735 1224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 867 1214 IPR027417 -
Vvi5g0735 1224 Pfam Zinc finger, C3HC4 type (RING finger) 984 1031 - -
Vvi5g0735 1224 CDD DEXDc_SHPRH-like 560 854 - -
Vvi5g0735 1224 ProSitePatterns Zinc finger RING-type signature. 1002 1011 IPR017907 -
Vvi5g0735 1224 SMART HIRAN_2 330 438 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vvi5g0735 1224 Pfam HIRAN domain 333 434 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vvi5g0735 1224 FunFam DNA repair protein RAD5B 615 855 - -
Vvi5g0735 1224 Pfam Helicase conserved C-terminal domain 1061 1171 IPR001650 -
Vvi5g0735 1224 Gene3D - 870 1224 IPR027417 -
Vvi5g0735 1224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 545 854 IPR027417 -
Vvi5g0735 1224 SMART helicmild6 1088 1171 IPR001650 -
Vvi5g0735 1224 SMART ultradead3 556 833 IPR014001 -
Vvi5g0735 1224 ProSiteProfiles Zinc finger RING-type profile. 987 1027 IPR001841 -
Vvi5g0735 1224 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 319 1224 - -
Vvi5g0735 1224 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 618 816 IPR014001 -
Vvi5g0735 1224 CDD SF2_C_SNF 1055 1182 - -
Vvi5g0735 1224 Pfam SNF2-related domain 563 932 IPR000330 GO:0005524|GO:0140658
Vvi5g0735 1224 SUPERFAMILY RING/U-box 983 1036 - -
Vvi5g0735 1224 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1057 1224 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g0735 Vvi-Chr5 7209922 7216168 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g0735 292 1224 RAD5 or RAD16-like Gene Family AT5G43530 71.199 0.0 1399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vvi5g0735 SNF2_N 1.2e-82 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g0735 K15505 - vvi:100264745 2453.32