Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi5g0735 | ATGGATTGCAATGCATCCGAAGACGATGGCAACATCCGAAAGATTAGATCTGTTTCAGGGTTCGATTCGCTCGAATCCGATAGCCTTCATGCGTTTCGGCAATGCAACAACGACCCAGATGCCGCCCTAAATTTCGACCGTGATGCCCCTCCGGTAACGGTTAAACGGACCATTACAAGTACTGGAGCCAGGATTCTTACTCAGATTAAGCAAGAGAAGTCTGACGAAGTGGAAGGAGCGGAGTTCCTTCATGGGTTGAAAACGAAGATCAAAGTAAAAGAAGAACCCGATTTGAATGTTGACGGGATTTTTGAAAAGGAGGTGGGTTCAAACCCGCCCCAGGTGGATCGGACTTGGGCGTTGGTGCCTCATAAGGAAATCATGAAAATGTCCTTTGATGAGTTCCTTCGAGCTACGGATGCCCACGTTGAACGAAAGGACCTTGAACGATCAGAAGAGGCTCAAGGGCATCATGGGTTGAAGGACAAGATCAAAGTAAAGGAAGAGCTTGATGTGGGGTTACTCGGCTCAGATAGCATTCGATCATTGGTCAAAAGACCGCCTGATGGATTTCTCGAATCCTATGATGATTTTGTCAAGCCAAAACGTACCAAAGATGAACATCGCAAAGAAAACTCACAATGGCATCCTGGGTTAAAGGAGAAGATCCAAATAAAGGAAGAACTTGATGCGACGTTACTGGGTACAGATTCTGCCAGAAATGAGAACTCAGGAATGCGGGGTGATAGCTTTGTCCAATCAAGGAACGGAAAAGTTATATCTGATGGCAACGGCCGCAATACTCAAAGTGTTCCTTATCACAATCCTCAGAAACCCTTTAATGTGAAGAAAGAGACAGCTCAATTTCTTCCTTATGGCAATCCTCAGAAAAACTTCAATGTGAAGCAAGGGAAAATTGAGGATAGACCAGTTACTTCTGTTTTGGTGGAGGATGGGGATTTTCCAGAAGAACCAGATTGGTTTTTGGTGGGGAGGACCCCCATTATAGGTCTTTCCACCACCAAAGGGAGGAAATTGGTAGACAATGAGATAGTCCATTTTTCTTTTCCTTCTGCTGATTTGAGAAATAAATGTAACTCAAAATGGGTTGCGAAGGCTGCTTCTGCAGCGTCTGCTATAGTTCGCTTCTCAACCAAACGTTCTGGAGAGATTGGTAGGCTGCCAATGGAGTGGACAAAGTGCATTATTCCACTGGTAAATTCTTCAAAGGTTAAGGTACTTGGTCGATGTGTAGCTGCACCAATAATTCTTCGATTGATGCAGGAAATAGTGTTGTATGTTAGCTTTTATATTCACCAGTCAGTCTTCACTGAGGGGAATAAGTCTTCATGGAGGCTAGATGCGGCCCCAAACATTGACTCCACAGTTTACCCTCTGCCAACTCTGTTCAAACTGCTGCAAATTAAACCATTTCAGGAGGCTGAATTCACCCCAGAGGAACTTGATTCAAGGAAACGTAAACTAAATCTAGAGGGTGATACAGATGAAGCTCCATCAATGTTGCCTATAGTGAAACAAAAAAAGGGTTGCCAACAGTATCCTGAACAAAACAATGATGAACAGGCTCTCTCAGAATCATCTCTAAATAAGCTTGTTGGGGCTGCAGATCAATATAACTTGGAGGAGATGGAGTCCCCAAGTACACTCATGTGTGATTTAAGGCCCTATCAGAAACAAGCTCTCTACTGGATGTCTGAATTGGAGAAGGGAAGTGATGCTGAGCAAGCACCAAAAACTCTTCACCCATGCTGGGCTGCCTATCAAATATGTGATGAGAGGGCTTCTGCAATCTATGTGAACATCTTCTCAGGAGAAGCAACTACACAACTACCCACAGCAATACATATGGCAAGAGGAGGAATTTTAGCAGATGCAATGGGGCTAGGGAAGACTGTGATGACAATTGCCCTAATACTGGCAAGACCAGGCAGGAGAAGCTCTGGTGTCCATAAACTCCTCACTGAAGCTGCAGATGATACTGAAGAAGCAGAGAAAAATACTGACTCTCACACAAAGGCCCCATTAAACGTAAAAGGCGGAACTCTTATTGTTTGTCCCATGGCCTTGTTAAGTCAGTGGAAGGATGAGCTGGAAACACATTCAAAGCCAGAAAGTATTTCTATTTTTATCCATTATGGTGGAGACAGAACCAATGACCCAAAGGTGATATCAGAACATGATGTGGTCTTGACAACATACGGTGTCTTAACTTCAGCTTATAAGAATGATGAAAATAGCAGCATTTTCCACAGAGTTGAGTGGTATAGGGTGGTGTTAGATGAAGCCCACACTATTAAATCCTCAAAGACCCTCAGTGCTCAGGCTGCTTTTGCATTACCTTCGCATTGCAGGTGGTGCCTGACGGGTACTCCCCTTCAGAATAATTTGGAAGATCTCTACAGCCTCCTATGCTTCTTGCATGTTGAGCCATGGTGTAACTGGGCTTGGTGGTACAAATTGATCCAAAAGCCTTATGAGTGTGGTGATCAGAGAGGGTTGAGGTTAATTAAAGCTATTTTGAGACCGCTGATGCTGAGGAGAACAAAGGACACAAAGGATAAAGAAGGAAGGCCCATACTCGTTCTTCCTCCAACTGACATTCAAGTCATCGAGTGTGAACAATCAGAAGCTGAACATGATTTTTATGATGCCCTTTTCAAGAGATCTAAAGTTCGGTTTGATCAATTTGTTGAACAAGGCAGAGTTCTTCACAACTATGCGTCTATCCTTGAGCTACTACTTCGACTGAGGCAATGCTGCAACCACCCATTTCTTGTTATGAGCCGAGGTGATACACAACAGTATGCAGACTTGAGTAAGCTTGCAAGAAAGTTCCTTGAAAACAATCCTTGCTCTGACACTTCAAATCACTCCATTCCTACCCGGGCATTTGTTGAAGAGGTCGTTGGGGGAATTAGACGGGGTGAAAATACAGAGTGCCCTATATGCCTAGAGTCTGCAGATGACCCAGTGCTCACACCATGTGCACATCTGATGTGCAGGGAATGCCTACTTTCAAGCTGGAGGACCCCCTTGAGTGGGCTATGCCCAATATGTCGGAAACTGCTAAAAAAAACAGATCTCATAACATGCCCATCAGAAAACCGATTTAGAATTGATGTTGAGAAGAACTGGAAGGAGTCTTCAAAGATCTCTGAACTTTTACATTGCTTGGAGCGTATTTCCCAGTCAAGAATTGGTGAGAAGAGCATTGTGTTTAGCCAATGGACTTCATTTTTAGATCTCTTGGAGATCCCATTGAGAAGGAGAGGAATCGGATTCTTAAGGTATGATGGAAAAGTGGTTCAGAAACAGAGGGAGAGGATTTTGAAGGAGTTCAGTGAGACTGAAGAGAAAACGGTATTGCTAATGTCACTGAAAGCCGGTGGTGTCGGCTTAAATCTAACAGCAGCCTCCAATGTATTCCTAATGGATCCCTGGTGGAACCCTGCAGTAGAGGAGCAAGCGATAATGCGAATTCACCGCATTGGACAAGAGCGAACAGTTCGTGTCAGAAGATTTATTGTGAAGGACACGGTGGAGGAACGGATGCAGCAAGTGCAAGCAAGGAAACAGCGCATGATCACCGGAGCCCTCACCGATGAGGAAGTTCGAACTGCCAGGATTGAGGAGCTCAAAATGCTGTTCAGATGA | 3675 | 0.4438 | MDCNASEDDGNIRKIRSVSGFDSLESDSLHAFRQCNNDPDAALNFDRDAPPVTVKRTITSTGARILTQIKQEKSDEVEGAEFLHGLKTKIKVKEEPDLNVDGIFEKEVGSNPPQVDRTWALVPHKEIMKMSFDEFLRATDAHVERKDLERSEEAQGHHGLKDKIKVKEELDVGLLGSDSIRSLVKRPPDGFLESYDDFVKPKRTKDEHRKENSQWHPGLKEKIQIKEELDATLLGTDSARNENSGMRGDSFVQSRNGKVISDGNGRNTQSVPYHNPQKPFNVKKETAQFLPYGNPQKNFNVKQGKIEDRPVTSVLVEDGDFPEEPDWFLVGRTPIIGLSTTKGRKLVDNEIVHFSFPSADLRNKCNSKWVAKAASAASAIVRFSTKRSGEIGRLPMEWTKCIIPLVNSSKVKVLGRCVAAPIILRLMQEIVLYVSFYIHQSVFTEGNKSSWRLDAAPNIDSTVYPLPTLFKLLQIKPFQEAEFTPEELDSRKRKLNLEGDTDEAPSMLPIVKQKKGCQQYPEQNNDEQALSESSLNKLVGAADQYNLEEMESPSTLMCDLRPYQKQALYWMSELEKGSDAEQAPKTLHPCWAAYQICDERASAIYVNIFSGEATTQLPTAIHMARGGILADAMGLGKTVMTIALILARPGRRSSGVHKLLTEAADDTEEAEKNTDSHTKAPLNVKGGTLIVCPMALLSQWKDELETHSKPESISIFIHYGGDRTNDPKVISEHDVVLTTYGVLTSAYKNDENSSIFHRVEWYRVVLDEAHTIKSSKTLSAQAAFALPSHCRWCLTGTPLQNNLEDLYSLLCFLHVEPWCNWAWWYKLIQKPYECGDQRGLRLIKAILRPLMLRRTKDTKDKEGRPILVLPPTDIQVIECEQSEAEHDFYDALFKRSKVRFDQFVEQGRVLHNYASILELLLRLRQCCNHPFLVMSRGDTQQYADLSKLARKFLENNPCSDTSNHSIPTRAFVEEVVGGIRRGENTECPICLESADDPVLTPCAHLMCRECLLSSWRTPLSGLCPICRKLLKKTDLITCPSENRFRIDVEKNWKESSKISELLHCLERISQSRIGEKSIVFSQWTSFLDLLEIPLRRRGIGFLRYDGKVVQKQRERILKEFSETEEKTVLLMSLKAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQERTVRVRRFIVKDTVEERMQQVQARKQRMITGALTDEEVRTARIEELKMLFR* | 1225 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi5g0735 | 1224 | Gene3D | - | 612 | 855 | IPR038718 | - | |
| Vvi5g0735 | 1224 | SMART | ring_2 | 987 | 1026 | IPR001841 | - | |
| Vvi5g0735 | 1224 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 960 | 1050 | IPR013083 | - | |
| Vvi5g0735 | 1224 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 867 | 1214 | IPR027417 | - | |
| Vvi5g0735 | 1224 | Pfam | Zinc finger, C3HC4 type (RING finger) | 984 | 1031 | - | - | |
| Vvi5g0735 | 1224 | CDD | DEXDc_SHPRH-like | 560 | 854 | - | - | |
| Vvi5g0735 | 1224 | ProSitePatterns | Zinc finger RING-type signature. | 1002 | 1011 | IPR017907 | - | |
| Vvi5g0735 | 1224 | SMART | HIRAN_2 | 330 | 438 | IPR014905 | GO:0003676|GO:0008270|GO:0016818 | |
| Vvi5g0735 | 1224 | Pfam | HIRAN domain | 333 | 434 | IPR014905 | GO:0003676|GO:0008270|GO:0016818 | |
| Vvi5g0735 | 1224 | FunFam | DNA repair protein RAD5B | 615 | 855 | - | - |
Showing 1 to 10 of 22 entries
Duplication type information
Functional genes information
Transcription factors information
Pathway information